Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   H0505_RS06525 Genome accession   NZ_LR822012
Coordinates   1264866..1266359 (-) Length   497 a.a.
NCBI ID   WP_179970969.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_30     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1259866..1271359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0505_RS06495 (STHERMO_1425) - 1259987..1260364 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  H0505_RS06500 (STHERMO_1426) - 1260369..1261067 (+) 699 WP_179970965.1 ABC transporter ATP-binding protein -
  H0505_RS06505 (STHERMO_1427) - 1261079..1261873 (+) 795 WP_179970966.1 ABC transporter permease -
  H0505_RS06510 (STHERMO_1428) amiF 1261923..1262852 (-) 930 WP_179970967.1 ATP-binding cassette domain-containing protein Regulator
  H0505_RS06515 (STHERMO_1429) amiE 1262845..1263930 (-) 1086 WP_179970968.1 ABC transporter ATP-binding protein Regulator
  H0505_RS06520 (STHERMO_1430) amiD 1263940..1264866 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H0505_RS06525 (STHERMO_1431) amiC 1264866..1266359 (-) 1494 WP_179970969.1 ABC transporter permease Regulator
  H0505_RS06530 (STHERMO_1432) amiA3 1266420..1268393 (-) 1974 WP_179970970.1 peptide ABC transporter substrate-binding protein Regulator
  H0505_RS06535 - 1268628..1268818 (-) 191 Protein_1240 IS3 family transposase -
  H0505_RS10265 - 1268809..1269221 (-) 413 Protein_1241 ATP-binding cassette domain-containing protein -
  H0505_RS06550 - 1269253..1269567 (-) 315 Protein_1242 TatD family hydrolase -
  H0505_RS06555 (STHERMO_1437) - 1269916..1271121 (+) 1206 WP_011227415.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55801.61 Da        Isoelectric Point: 10.0158

>NTDB_id=1130743 H0505_RS06525 WP_179970969.1 1264866..1266359(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_30]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRHLIFRQDPNYNKIAKTADSKTNYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1130743 H0505_RS06525 WP_179970969.1 1264866..1266359(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_30]
ATGAAAAGATATATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCATCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
CAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTACCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCGGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAGTCGTTATCAATATCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGCGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGCTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

96.579

100

0.966
  amiC Streptococcus thermophilus LMG 18311

96.579

100

0.966
  amiC Streptococcus salivarius strain HSISS4

95.976

100

0.96

Multiple sequence alignment