Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H0505_RS06510 Genome accession   NZ_LR822012
Coordinates   1261923..1262852 (-) Length   309 a.a.
NCBI ID   WP_179970967.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_30     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1256923..1267852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0505_RS06485 (STHERMO_1423) - 1258202..1259017 (-) 816 WP_179970963.1 Cof-type HAD-IIB family hydrolase -
  H0505_RS06490 (STHERMO_1424) - 1259010..1259804 (-) 795 WP_179970964.1 HAD-IIB family hydrolase -
  H0505_RS06495 (STHERMO_1425) - 1259987..1260364 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  H0505_RS06500 (STHERMO_1426) - 1260369..1261067 (+) 699 WP_179970965.1 ABC transporter ATP-binding protein -
  H0505_RS06505 (STHERMO_1427) - 1261079..1261873 (+) 795 WP_179970966.1 ABC transporter permease -
  H0505_RS06510 (STHERMO_1428) amiF 1261923..1262852 (-) 930 WP_179970967.1 ATP-binding cassette domain-containing protein Regulator
  H0505_RS06515 (STHERMO_1429) amiE 1262845..1263930 (-) 1086 WP_179970968.1 ABC transporter ATP-binding protein Regulator
  H0505_RS06520 (STHERMO_1430) amiD 1263940..1264866 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H0505_RS06525 (STHERMO_1431) amiC 1264866..1266359 (-) 1494 WP_179970969.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35170.30 Da        Isoelectric Point: 6.7821

>NTDB_id=1130740 H0505_RS06510 WP_179970967.1 1261923..1262852(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_30]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKQIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1130740 H0505_RS06510 WP_179970967.1 1261923..1262852(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_30]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGCAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus thermophilus LMD-9

99.353

100

0.994
  amiF Streptococcus salivarius strain HSISS4

98.058

100

0.981

Multiple sequence alignment