Detailed information NTG1130742

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: H0505_RS06520
• Genome accession: NZ_LR822012
• Coordinates: 1263940..1264866 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_30
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1258940..1269866

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0505_RS06490 (STHERMO_1424)	-	1259010..1259804 (-)	795	WP_179970964.1	HAD-IIB family hydrolase	-
H0505_RS06495 (STHERMO_1425)	-	1259987..1260364 (+)	378	WP_011226300.1	GntR family transcriptional regulator	-
H0505_RS06500 (STHERMO_1426)	-	1260369..1261067 (+)	699	WP_179970965.1	ABC transporter ATP-binding protein	-
H0505_RS06505 (STHERMO_1427)	-	1261079..1261873 (+)	795	WP_179970966.1	ABC transporter permease	-
H0505_RS06510 (STHERMO_1428)	amiF	1261923..1262852 (-)	930	WP_179970967.1	ATP-binding cassette domain-containing protein	Regulator
H0505_RS06515 (STHERMO_1429)	amiE	1262845..1263930 (-)	1086	WP_179970968.1	ABC transporter ATP-binding protein	Regulator
H0505_RS06520 (STHERMO_1430)	amiD	1263940..1264866 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
H0505_RS06525 (STHERMO_1431)	amiC	1264866..1266359 (-)	1494	WP_179970969.1	ABC transporter permease	Regulator
H0505_RS06530 (STHERMO_1432)	amiA3	1266420..1268393 (-)	1974	WP_179970970.1	peptide ABC transporter substrate-binding protein	Regulator
H0505_RS06535	-	1268628..1268818 (-)	191	Protein_1240	IS3 family transposase	-
H0505_RS10265	-	1268809..1269221 (-)	413	Protein_1241	ATP-binding cassette domain-containing protein	-
H0505_RS06550	-	1269253..1269567 (-)	315	Protein_1242	TatD family hydrolase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=1130742 H0505_RS06520 WP_002946409.1 1263940..1264866(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_30]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=1130742 H0505_RS06520 WP_002946409.1 1263940..1264866(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_30]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964