Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   H0503_RS06735 Genome accession   NZ_LR822009
Coordinates   1296601..1298094 (-) Length   497 a.a.
NCBI ID   WP_179970969.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_19     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291601..1303094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0503_RS06705 (STHERMO_1499) - 1291731..1292108 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  H0503_RS06710 (STHERMO_1500) - 1292113..1292811 (+) 699 WP_014608540.1 ABC transporter ATP-binding protein -
  H0503_RS06715 (STHERMO_1501) - 1292823..1293608 (+) 786 WP_002951425.1 hypothetical protein -
  H0503_RS06720 (STHERMO_1502) amiF 1293658..1294587 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  H0503_RS06725 (STHERMO_1503) amiE 1294580..1295665 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  H0503_RS06730 (STHERMO_1504) amiD 1295675..1296601 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H0503_RS06735 (STHERMO_1505) amiC 1296601..1298094 (-) 1494 WP_179970969.1 ABC transporter permease Regulator
  H0503_RS06740 (STHERMO_1506) amiA3 1298155..1300128 (-) 1974 WP_111679665.1 peptide ABC transporter substrate-binding protein Regulator
  H0503_RS06745 (STHERMO_1508) - 1300434..1301581 (+) 1148 WP_095559415.1 IS3 family transposase -
  H0503_RS06750 - 1301619..1301803 (-) 185 Protein_1295 IS3 family transposase -
  H0503_RS10000 - 1301797..1302207 (-) 411 Protein_1296 ATP-binding cassette domain-containing protein -
  H0503_RS06765 (STHERMO_1511) - 1302239..1302553 (-) 315 Protein_1297 TatD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55801.61 Da        Isoelectric Point: 10.0158

>NTDB_id=1130566 H0503_RS06735 WP_179970969.1 1296601..1298094(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_19]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRHLIFRQDPNYNKIAKTADSKTNYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1130566 H0503_RS06735 WP_179970969.1 1296601..1298094(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_19]
ATGAAAAGATATATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCATCTGATTTTCAGACAGGACCCGAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
CAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTACCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCGGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGCGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGCTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

96.579

100

0.966
  amiC Streptococcus thermophilus LMG 18311

96.579

100

0.966
  amiC Streptococcus salivarius strain HSISS4

95.976

100

0.96

Multiple sequence alignment