Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H0503_RS06720 Genome accession   NZ_LR822009
Coordinates   1293658..1294587 (-) Length   309 a.a.
NCBI ID   WP_011681415.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_19     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1288658..1299587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0503_RS06695 (STHERMO_1497) - 1289945..1290760 (-) 816 WP_011226298.1 Cof-type HAD-IIB family hydrolase -
  H0503_RS06700 (STHERMO_1498) - 1290753..1291547 (-) 795 WP_011681412.1 HAD-IIB family hydrolase -
  H0503_RS06705 (STHERMO_1499) - 1291731..1292108 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  H0503_RS06710 (STHERMO_1500) - 1292113..1292811 (+) 699 WP_014608540.1 ABC transporter ATP-binding protein -
  H0503_RS06715 (STHERMO_1501) - 1292823..1293608 (+) 786 WP_002951425.1 hypothetical protein -
  H0503_RS06720 (STHERMO_1502) amiF 1293658..1294587 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  H0503_RS06725 (STHERMO_1503) amiE 1294580..1295665 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  H0503_RS06730 (STHERMO_1504) amiD 1295675..1296601 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H0503_RS06735 (STHERMO_1505) amiC 1296601..1298094 (-) 1494 WP_179970969.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35170.30 Da        Isoelectric Point: 6.7823

>NTDB_id=1130563 H0503_RS06720 WP_011681415.1 1293658..1294587(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_19]
MPEKLVEVKNVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1130563 H0503_RS06720 WP_011681415.1 1293658..1294587(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_19]
ATGCCTGAGAAATTAGTTGAAGTAAAAAATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGATCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

100

100

1
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus salivarius strain HSISS4

97.735

100

0.977

Multiple sequence alignment