Detailed information NTG1130565

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: H0503_RS06730
• Genome accession: NZ_LR822009
• Coordinates: 1295675..1296601 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_19
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1290675..1301601

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0503_RS06700 (STHERMO_1498)	-	1290753..1291547 (-)	795	WP_011681412.1	HAD-IIB family hydrolase	-
H0503_RS06705 (STHERMO_1499)	-	1291731..1292108 (+)	378	WP_011681413.1	GntR family transcriptional regulator	-
H0503_RS06710 (STHERMO_1500)	-	1292113..1292811 (+)	699	WP_014608540.1	ABC transporter ATP-binding protein	-
H0503_RS06715 (STHERMO_1501)	-	1292823..1293608 (+)	786	WP_002951425.1	hypothetical protein	-
H0503_RS06720 (STHERMO_1502)	amiF	1293658..1294587 (-)	930	WP_011681415.1	ATP-binding cassette domain-containing protein	Regulator
H0503_RS06725 (STHERMO_1503)	amiE	1294580..1295665 (-)	1086	WP_011226304.1	ABC transporter ATP-binding protein	Regulator
H0503_RS06730 (STHERMO_1504)	amiD	1295675..1296601 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
H0503_RS06735 (STHERMO_1505)	amiC	1296601..1298094 (-)	1494	WP_179970969.1	ABC transporter permease	Regulator
H0503_RS06740 (STHERMO_1506)	amiA3	1298155..1300128 (-)	1974	WP_111679665.1	peptide ABC transporter substrate-binding protein	Regulator
H0503_RS06745 (STHERMO_1508)	-	1300434..1301581 (+)	1148	WP_095559415.1	IS3 family transposase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=1130565 H0503_RS06730 WP_002946409.1 1295675..1296601(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_19]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=1130565 H0503_RS06730 WP_002946409.1 1295675..1296601(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_19]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964