Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1X59_RS18370 Genome accession   NZ_LR813086
Coordinates   3874449..3875015 (-) Length   188 a.a.
NCBI ID   WP_183303728.1    Uniprot ID   -
Organism   Comamonas aquatica isolate BB1454     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3869449..3880015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1X59_RS18345 (TML_03635) hprK 3869782..3870747 (+) 966 WP_042415854.1 HPr(Ser) kinase/phosphatase -
  L1X59_RS18350 (TML_03636) fur 3870815..3871243 (-) 429 WP_042415857.1 ferric iron uptake transcriptional regulator -
  L1X59_RS18355 (TML_03637) - 3871391..3871936 (+) 546 WP_042415860.1 outer membrane protein assembly factor BamE -
  L1X59_RS18360 (TML_03638) dapB 3872035..3872862 (+) 828 WP_183303726.1 4-hydroxy-tetrahydrodipicolinate reductase -
  L1X59_RS18365 (TML_03639) - 3872921..3874279 (-) 1359 WP_234687211.1 diguanylate cyclase -
  L1X59_RS18370 (TML_03640) ssb 3874449..3875015 (-) 567 WP_183303728.1 single-stranded DNA-binding protein Machinery gene
  L1X59_RS18375 (TML_03641) - 3875287..3876468 (-) 1182 WP_234688495.1 MFS transporter -
  L1X59_RS18380 (TML_03642) uvrA 3876665..3879706 (+) 3042 WP_420868890.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20454.61 Da        Isoelectric Point: 5.9554

>NTDB_id=1130415 L1X59_RS18370 WP_183303728.1 3874449..3875015(-) (ssb) [Comamonas aquatica isolate BB1454]
MASVNKVILVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKESTEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQATGQERYATEIRADSMQMLGSRQGMGGGNQNQGYGDDAGYGDNGGYEAQAPRRAPAPAPRQAAPQQRMAP
PAAAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1130415 L1X59_RS18370 WP_183303728.1 3874449..3875015(-) (ssb) [Comamonas aquatica isolate BB1454]
ATGGCATCCGTCAACAAGGTCATCCTGGTCGGCAACTTGGGGCGCGACCCCGAAATGCGCACTTTCCCCAGCGGGGACCA
GGTCGCCAATGTCACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAATCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATGTGGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCACCGGCCAGGAGCGCTACGCGACCGAAATCCGTGCCGACAGCATGCA
GATGCTGGGCAGCCGCCAGGGCATGGGCGGCGGCAACCAGAACCAGGGCTATGGCGATGACGCCGGCTATGGCGACAACG
GTGGCTATGAGGCCCAAGCCCCACGCCGCGCGCCAGCGCCCGCACCGCGCCAGGCCGCACCCCAGCAGCGCATGGCACCG
CCCGCGGCTGCTCCCGCGCCCATGGCCCCACCGCCTCAGCGCGCGGCTTCCGGCTTTGACGACATGGACGACGACATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.525

100

0.553
  ssb Vibrio cholerae strain A1552

52.577

100

0.543
  ssb Neisseria gonorrhoeae MS11

44.444

100

0.447
  ssb Neisseria meningitidis MC58

43.915

100

0.441

Multiple sequence alignment