Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1Z78_RS26850 Genome accession   NZ_LR813084
Coordinates   5896493..5897053 (+) Length   186 a.a.
NCBI ID   WP_234639369.1    Uniprot ID   -
Organism   Delftia tsuruhatensis isolate BB1455     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5891493..5902053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1Z78_RS26840 (TML_05334) uvrA 5891800..5894901 (-) 3102 WP_234639368.1 excinuclease ABC subunit UvrA -
  L1Z78_RS26845 (TML_05335) - 5895158..5896333 (+) 1176 WP_234642273.1 MFS transporter -
  L1Z78_RS26850 (TML_05336) ssb 5896493..5897053 (+) 561 WP_234639369.1 single-stranded DNA-binding protein Machinery gene
  L1Z78_RS26855 (TML_05337) paaE 5897278..5898375 (-) 1098 WP_234639370.1 1,2-phenylacetyl-CoA epoxidase subunit PaaE -
  L1Z78_RS26860 (TML_05338) paaD 5898372..5898917 (-) 546 WP_234639371.1 1,2-phenylacetyl-CoA epoxidase subunit PaaD -
  L1Z78_RS26865 (TML_05339) paaC 5898917..5899687 (-) 771 WP_234639372.1 1,2-phenylacetyl-CoA epoxidase subunit PaaC -
  L1Z78_RS26870 (TML_05340) paaB 5899701..5900018 (-) 318 WP_234639373.1 1,2-phenylacetyl-CoA epoxidase subunit PaaB -
  L1Z78_RS26875 (TML_05341) paaA 5900015..5901037 (-) 1023 WP_234639374.1 1,2-phenylacetyl-CoA epoxidase subunit PaaA -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20152.26 Da        Isoelectric Point: 5.9554

>NTDB_id=1130398 L1Z78_RS26850 WP_234639369.1 5896493..5897053(+) (ssb) [Delftia tsuruhatensis isolate BB1455]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADTMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQRRAAPAPMAAAPRQAPAQR
PAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1130398 L1Z78_RS26850 WP_234639369.1 5896493..5897053(+) (ssb) [Delftia tsuruhatensis isolate BB1455]
ATGGCATCCGTCAACAAGGTCATCATCGTCGGCAACCTGGGTCGCGACCCCGAAATGCGCACCTTCCCGAGCGGTGACCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACGGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAATGGCCGCCTGGCCGAGATCGTCGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTACGTGGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCAGCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACACCATGCA
GATGCTGGGCAGCCGCCAGGGCGGCGGTGGCGGCCAGCAAGGCGGCGGCTACGGCGATGAAGGCTACGGCGACAGCGGCT
ACGACGCCCCGCCCCAGCAGCAGCGCCGCGCGGCTCCCGCGCCCATGGCCGCAGCACCGCGGCAGGCCCCAGCGCAACGT
CCCGCCCCCGCACCCATGGCGCCCCCACCACAGCGCGCGGCCTCGGGCTTCGACGACATGGACGACGACATCCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.646

100

0.554
  ssb Vibrio cholerae strain A1552

50.761

100

0.538
  ssb Neisseria gonorrhoeae MS11

46.809

100

0.473
  ssb Neisseria meningitidis MC58

45.745

100

0.462

Multiple sequence alignment