Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PSYRH_RS22690 Genome accession   NZ_CP006256
Coordinates   5234473..5235810 (+) Length   445 a.a.
NCBI ID   WP_017279844.1    Uniprot ID   A0AAD0MWD9
Organism   Pseudomonas syringae pv. syringae HS191     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5229473..5240810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYRH_RS22665 (PsyrH_23180) pgeF 5229670..5230398 (-) 729 WP_046720030.1 peptidoglycan editing factor PgeF -
  PSYRH_RS22670 (PsyrH_23185) rluD 5230395..5231357 (-) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSYRH_RS22675 (PsyrH_23190) - 5231507..5232529 (+) 1023 WP_003344571.1 outer membrane protein assembly factor BamD -
  PSYRH_RS22680 (PsyrH_23195) - 5232649..5232888 (+) 240 WP_011266590.1 PP0621 family protein -
  PSYRH_RS22685 (PsyrH_23200) pilS 5232878..5234470 (+) 1593 WP_046720031.1 ATP-binding protein Regulator
  PSYRH_RS22690 (PsyrH_23205) pilR 5234473..5235810 (+) 1338 WP_017279844.1 sigma-54 dependent transcriptional regulator Regulator
  PSYRH_RS22695 (PsyrH_23210) thiO 5235937..5237040 (-) 1104 WP_046720032.1 glycine oxidase ThiO -
  PSYRH_RS22700 (PsyrH_23215) - 5237066..5237467 (-) 402 WP_046720033.1 type IV pilin protein -
  PSYRH_RS22705 (PsyrH_23220) - 5237479..5240676 (-) 3198 WP_046720034.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49653.60 Da        Isoelectric Point: 6.2986

>NTDB_id=113038 PSYRH_RS22690 WP_017279844.1 5234473..5235810(+) (pilR) [Pseudomonas syringae pv. syringae HS191]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAGSV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESVSPQEGDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=113038 PSYRH_RS22690 WP_017279844.1 5234473..5235810(+) (pilR) [Pseudomonas syringae pv. syringae HS191]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATCCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGCAGTGCACGTAACGTTGCCGAAGCCCATGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCTGATGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCACACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
CGACCTCGGCAGGCTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGAAGCATCGACAACC
GACTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGTAATCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGCGTCTGATCCACGAGCAGGGCCCGCGCATCGACAAACCTTT
CATCCCGGTGAATTGCGGCGCCATCCCTTCCGAACTCATGGAAAGCGAATTCTTCGGTCATCGCAAAGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAAGCGGCGCACACCGGGACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATTCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCAGGTCGGTTCCGTCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCGGGCAGCGTG
CTCAAGCGCCTTGCCGGAAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCCGTCAGCCCTCAGGAGGGCGACGGCCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCGCTTGAAGAAACCCGCTGGAACCGCACCGCTGCAGCAGAAAG
GCTCAGCTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.201

99.551

0.769
  pilR Acinetobacter baumannii strain A118

48.394

100

0.508
  luxO Vibrio cholerae strain A1552

37.613

99.775

0.375

Multiple sequence alignment