Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSYRH_RS22685 Genome accession   NZ_CP006256
Coordinates   5232878..5234470 (+) Length   530 a.a.
NCBI ID   WP_046720031.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. syringae HS191     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5227878..5239470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYRH_RS22665 (PsyrH_23180) pgeF 5229670..5230398 (-) 729 WP_046720030.1 peptidoglycan editing factor PgeF -
  PSYRH_RS22670 (PsyrH_23185) rluD 5230395..5231357 (-) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSYRH_RS22675 (PsyrH_23190) - 5231507..5232529 (+) 1023 WP_003344571.1 outer membrane protein assembly factor BamD -
  PSYRH_RS22680 (PsyrH_23195) - 5232649..5232888 (+) 240 WP_011266590.1 PP0621 family protein -
  PSYRH_RS22685 (PsyrH_23200) pilS 5232878..5234470 (+) 1593 WP_046720031.1 ATP-binding protein Regulator
  PSYRH_RS22690 (PsyrH_23205) pilR 5234473..5235810 (+) 1338 WP_017279844.1 sigma-54 dependent transcriptional regulator Regulator
  PSYRH_RS22695 (PsyrH_23210) thiO 5235937..5237040 (-) 1104 WP_046720032.1 glycine oxidase ThiO -
  PSYRH_RS22700 (PsyrH_23215) - 5237066..5237467 (-) 402 WP_046720033.1 type IV pilin protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58002.88 Da        Isoelectric Point: 6.8620

>NTDB_id=113037 PSYRH_RS22685 WP_046720031.1 5232878..5234470(+) (pilS) [Pseudomonas syringae pv. syringae HS191]
MTADSPSLVSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEALNALILQRMRTGILVLDANHQVLLANQSALHLLSQEQLVGQMID
TCSPQLVERLRQWLVNPIMVPRSITTAPVGLVLQPSFATLNRGDQRQTLVFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSAAPN
QSIHVDISPGTLTTRMDSGQLTQIMTNLVQNGLRYSGKNHPSAQVWLKLHNEPRSDLPTLEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPSGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=113037 PSYRH_RS22685 WP_046720031.1 5232878..5234470(+) (pilS) [Pseudomonas syringae pv. syringae HS191]
GTGACCGCTGATTCACCGTCCCTTGTCAGCCCGCAGGCACAGCGGATTCTGCGGCTGTACCACCTTTATCGACTGACCAT
CGGCGTCGTACTGGTGCTGTTGATTTCCAGCAGCCTGGAAACCGAGCTGCTGCAACTGGCCAACCCGAACCTGTTCCGCT
CGGGCTGCTGGCTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAACGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACTGACGCGATCATGCTCTCCGCGCTGTTCTATGCAGCGGGCGGGCCTTCAAGCGGTATCGGCAACCT
GTTGATTGCCTCGGTGGCGATCAGCAACGTGTTGCTGCGCGGCCGTATCGGCTTGTTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTATATCAGCTTCGGCACACCCTCGGTCTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCTTTATGCTTCGCCGCCGCCCTGCTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAGGTACTGGCCGAACAGCG
CGCAGCGGATGTCGACAGCCTCGAGGCACTCAACGCACTCATTTTGCAGCGCATGCGTACCGGCATTCTGGTGCTGGATG
CCAATCACCAGGTGCTGCTGGCCAACCAGAGTGCCTTGCACCTGCTGAGCCAGGAGCAACTGGTCGGCCAGATGATCGAC
ACCTGCTCGCCGCAGCTGGTTGAACGCCTGCGCCAGTGGCTCGTCAATCCGATCATGGTGCCGCGCAGTATCACCACCGC
CCCCGTCGGGCTGGTACTGCAACCGAGCTTTGCCACACTCAACCGTGGCGATCAGCGTCAGACGCTGGTTTTTCTCGAAG
ACCTGTCGCAGATCGCCCATCAGGCGCAGCAGCTCAAGCTCGCCGCACTGGGACGCCTGACCGCCGGGATTGCCCATGAG
ATACGCAACCCGCTGGGCGCCGTCAGTCATGCGGCTCAACTGCTTAATGAATCGGAAGAGCTCAGTGCAGCGGATCGACG
CCTGGGGCAGATCATTCATGAGCAGTCGGGACGCATTGACCGAGTCATCGAAAATGTCCTGCAATTGTCGCGCAGACGCG
AAGCGCAACCCGAACTGCTCGATCTGAAAACCTGGCTGGAACACTTTGTCGCTGAATTTCGCAGTTCCGCAGCGCCCAAT
CAGTCTATTCATGTCGACATCAGCCCCGGCACGCTGACAACCCGCATGGATTCTGGACAGTTGACGCAAATCATGACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGAATCATCCGTCAGCGCAGGTCTGGCTGAAACTGCACAATGAACCGA
GAAGCGATTTGCCTACGCTGGAAGTGCTGGACGATGGGCCGGGGGTCAGCGAGCAACACCTGAGCAAGATCTTCGAACCG
TTTTTCACCACAGAAAGCAAAGGCACCGGCCTTGGTCTATATCTGTCACGTGAACTGTGCGAAAGCAATCAGGCGCATCT
GGAATATGCGCCCCGCCCCTCGGGTGGCAGCTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.017

100

0.611

Multiple sequence alignment