Detailed information NTG0113036

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSYRH_RS21850
• Genome accession: NZ_CP006256
• Coordinates: 5069615..5070508 (+)
• Length: 297 a.a.
• NCBI ID: WP_046719963.1
• Uniprot ID: -
• Organism: Pseudomonas syringae pv. syringae HS191
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5064615..5075508

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSYRH_RS27325	-	5066078..5066473 (-)	396	WP_046719960.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PSYRH_RS21840 (PsyrH_22310)	pilB	5066699..5068393 (+)	1695	WP_046719961.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSYRH_RS21845 (PsyrH_22315)	pilC	5068396..5069613 (+)	1218	WP_046719962.1	type II secretion system F family protein	Machinery gene
PSYRH_RS21850 (PsyrH_22320)	pilD	5069615..5070508 (+)	894	WP_046719963.1	A24 family peptidase	Machinery gene
PSYRH_RS21855 (PsyrH_22325)	coaE	5070505..5071128 (+)	624	WP_046719964.1	dephospho-CoA kinase	-
PSYRH_RS21860 (PsyrH_22330)	yacG	5071125..5071334 (+)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
PSYRH_RS21865 (PsyrH_22335)	-	5071460..5071921 (-)	462	WP_046720350.1	hypothetical protein	-
PSYRH_RS21870 (PsyrH_22340)	-	5072049..5072678 (+)	630	WP_003430735.1	DUF1780 domain-containing protein	-
PSYRH_RS21875 (PsyrH_22345)	-	5072675..5073208 (+)	534	WP_003317783.1	MOSC domain-containing protein	-
PSYRH_RS29100	-	5073093..5073329 (+)	237	WP_223886507.1	DUF3094 family protein	-
PSYRH_RS21880 (PsyrH_22350)	-	5073425..5074723 (+)	1299	WP_003392712.1	NAD(P)/FAD-dependent oxidoreductase	-
PSYRH_RS27335 (PsyrH_22355)	-	5074931..5075095 (+)	165	Protein_4362	transposase	-
PSYRH_RS27340	-	5075106..5075204 (+)	99	Protein_4363	IS3 family transposase	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32693.07 Da
• Isoelectric Point: 8.4795

>NTDB_id=113036 PSYRH_RS21850 WP_046719963.1 5069615..5070508(+) (pilD) [Pseudomonas syringae pv. syringae HS191]
MPLLDLLASSPLAFVTTCCILGLIIGSFLNVVVYRLPIMMERDWKAQSRELLGLPAEPDQPVFNLNRPHSSCPQCAHKIR
PWENLPVISYLLLRGKCSLLRGKCSQCKAPISKRYPLVELTCAVLSAYVAWHFGFGWQAAAMLVLGWGLLAMSLIDADHQ
LLPDSMVLPLLWLGLIVNAFGLLTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTI
LLSSLVGAVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 894 bp

>NTDB_id=113036 PSYRH_RS21850 WP_046719963.1 5069615..5070508(+) (pilD) [Pseudomonas syringae pv. syringae HS191]
ATGCCCCTCCTCGACCTCCTGGCCAGCTCCCCTCTGGCCTTCGTCACCACCTGCTGCATTCTCGGCCTGATCATCGGAAG
CTTCCTCAACGTGGTCGTCTATCGCCTGCCAATAATGATGGAGCGCGACTGGAAAGCCCAATCCCGTGAACTGCTCGGCC
TGCCCGCCGAACCCGATCAACCCGTCTTCAATCTGAACCGCCCCCATTCCAGCTGCCCGCAATGCGCACACAAAATCCGC
CCGTGGGAGAACCTGCCGGTGATCAGCTATCTGCTGCTGCGTGGTAAATGCTCGCTGCTGCGTGGTAAATGCTCGCAGTG
TAAAGCCCCCATCAGCAAACGCTACCCATTGGTAGAGCTGACCTGCGCAGTGTTGTCGGCCTACGTGGCCTGGCATTTCG
GCTTTGGTTGGCAGGCGGCGGCGATGCTGGTATTGGGCTGGGGGCTGCTGGCGATGAGTCTGATCGATGCTGATCACCAG
CTGTTACCTGATTCTATGGTGCTGCCACTGCTGTGGCTGGGCCTGATCGTCAACGCCTTCGGGCTGTTAACCTCGCTGAA
CGATGCGCTGTGGGGAGCGGTGGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACTGGCAAGG
AAGGCATGGGTTATGGCGACTTCAAGTTGCTGGCCATGCTAGGCGCGTGGGGCGGCTGGCAGATTTTGCCGTTGACCATC
CTGTTATCGTCGCTGGTGGGCGCGGTGCTCGGAGTGATCATGATGCGTGTGCGCAGGGTCGAAAGCGGTACGCCGATCCC
CTTTGGTCCTTATCTGGCCATTGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTG
CCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-133)

• Type IV leader peptidase family (Peptidase_A24) (143-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	50.69	97.643	0.495
pilD	Vibrio cholerae strain A1552	50.69	97.643	0.495
pilD	Acinetobacter baumannii D1279779	51.246	94.613	0.485
pilD	Acinetobacter nosocomialis M2	50.534	94.613	0.478
pilD	Neisseria gonorrhoeae MS11	50.182	92.593	0.465