Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HKD36_RS16120 Genome accession   NZ_LR792684
Coordinates   3294100..3294564 (-) Length   154 a.a.
NCBI ID   WP_100669047.1    Uniprot ID   -
Organism   Kyrpidia spormannii isolate FAVT5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3289100..3299564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKD36_RS16095 (FAVT5_3586) dnaB 3289686..3291026 (-) 1341 WP_407928410.1 replicative DNA helicase -
  HKD36_RS16100 (FAVT5_3587) rplI 3291055..3291498 (-) 444 WP_100669044.1 50S ribosomal protein L9 -
  HKD36_RS16105 (FAVT5_3588) - 3291530..3291841 (-) 312 WP_157935575.1 MazG-like family protein -
  HKD36_RS16110 (FAVT5_3589) - 3292117..3293739 (+) 1623 WP_170099996.1 thiamine pyrophosphate-binding protein -
  HKD36_RS16115 (FAVT5_3590) rpsR 3293824..3294054 (-) 231 WP_013077189.1 30S ribosomal protein S18 -
  HKD36_RS16120 (FAVT5_3591) ssbA 3294100..3294564 (-) 465 WP_100669047.1 single-stranded DNA-binding protein Machinery gene
  HKD36_RS16125 (FAVT5_3592) rpsF 3294581..3294868 (-) 288 WP_100669048.1 30S ribosomal protein S6 -
  HKD36_RS16915 (FAVT5_3594) - 3295203..3295553 (-) 351 WP_232059780.1 hypothetical protein -
  HKD36_RS16130 (FAVT5_3595) - 3295480..3296613 (-) 1134 WP_232070158.1 transposase family protein -
  HKD36_RS16135 (FAVT5_3596) - 3296610..3297518 (-) 909 WP_170086073.1 Druantia anti-phage system protein DruA -
  HKD36_RS16140 (FAVT5_3597) ychF 3297701..3298801 (-) 1101 WP_170086709.1 redox-regulated ATPase YchF -
  HKD36_RS16145 (FAVT5_3599) - 3298927..3299163 (-) 237 WP_100669050.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17281.39 Da        Isoelectric Point: 4.8818

>NTDB_id=1130358 HKD36_RS16120 WP_100669047.1 3294100..3294564(-) (ssbA) [Kyrpidia spormannii isolate FAVT5]
MLNRIILIGRLTQDPELRYTPSGTPVAHFTLAVDRPRLNQMGERETDFINIVVWQKLGELCAQYLRKGRLAAVEGRLQIR
SYENREGQRVRVAEVVADNVRFLDRAGDREGGPSAPPASGSGWPEEARTRSTGMDDPFEGDATRIDISEDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1130358 HKD36_RS16120 WP_100669047.1 3294100..3294564(-) (ssbA) [Kyrpidia spormannii isolate FAVT5]
ATGCTCAACCGCATCATTCTGATTGGCCGCCTAACCCAGGATCCGGAGTTGCGGTACACGCCATCAGGGACACCGGTGGC
CCATTTTACGTTGGCTGTCGACCGGCCTCGCCTCAACCAGATGGGAGAGCGGGAGACAGATTTTATTAACATTGTGGTTT
GGCAGAAACTCGGCGAACTCTGCGCCCAGTACCTACGCAAAGGACGACTGGCTGCGGTGGAGGGCCGATTGCAGATTCGC
AGCTACGAGAATCGCGAAGGGCAACGCGTGCGGGTGGCGGAAGTGGTGGCCGACAATGTTCGTTTCCTGGACCGTGCGGG
TGATCGGGAGGGCGGGCCGAGTGCCCCACCGGCCTCAGGCAGCGGGTGGCCGGAGGAGGCCCGTACCCGGAGCACGGGCA
TGGATGATCCGTTCGAGGGAGACGCCACGCGGATCGATATTTCTGAAGATGATCTCCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.256

100

0.539
  ssb Latilactobacillus sakei subsp. sakei 23K

43.429

100

0.494
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.808

67.532

0.37
  ssb Vibrio cholerae strain A1552

32.558

100

0.364

Multiple sequence alignment