Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV361_RS21900 Genome accession   NZ_LR782232
Coordinates   4605766..4606302 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate SC467     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4600766..4611302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV361_RS21880 soxR 4602494..4602958 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  HV361_RS21885 soxS 4603044..4603367 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HV361_RS21890 pdeC 4603370..4604956 (-) 1587 WP_000019539.1 c-di-GMP phosphodiesterase PdeC -
  HV361_RS21895 yjcB 4605386..4605667 (+) 282 WP_001295689.1 YjcB family protein -
  HV361_RS21900 ssb 4605766..4606302 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV361_RS21905 uvrA 4606556..4609378 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HV361_RS21910 yjbR 4609413..4609769 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HV361_RS21915 yjbQ 4609773..4610189 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HV361_RS21920 aphA 4610300..4611013 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1130295 HV361_RS21900 WP_000168305.1 4605766..4606302(-) (ssb) [Escherichia coli isolate SC467]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1130295 HV361_RS21900 WP_000168305.1 4605766..4606302(-) (ssb) [Escherichia coli isolate SC467]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment