Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSYRH_RS18050 Genome accession   NZ_CP006256
Coordinates   4245095..4247311 (-) Length   738 a.a.
NCBI ID   WP_046719753.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. syringae HS191     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4240095..4252311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYRH_RS18020 (PsyrH_18395) murB 4240895..4241914 (-) 1020 WP_044311729.1 UDP-N-acetylmuramate dehydrogenase -
  PSYRH_RS18025 (PsyrH_18400) kdsB 4241949..4242713 (-) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSYRH_RS18030 (PsyrH_18405) - 4242710..4242895 (-) 186 WP_002552679.1 Trm112 family protein -
  PSYRH_RS18035 (PsyrH_18410) lpxK 4242913..4243908 (-) 996 WP_024648606.1 tetraacyldisaccharide 4'-kinase -
  PSYRH_RS18040 (PsyrH_18415) - 4243908..4244339 (-) 432 WP_003317468.1 biopolymer transporter ExbD -
  PSYRH_RS18045 (PsyrH_18420) exbB 4244336..4245052 (-) 717 WP_003317467.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSYRH_RS18050 (PsyrH_18425) comA 4245095..4247311 (-) 2217 WP_046719753.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSYRH_RS18055 (PsyrH_18430) - 4247448..4248236 (-) 789 WP_003421319.1 ABC transporter permease -
  PSYRH_RS18060 (PsyrH_18435) - 4248233..4249165 (-) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  PSYRH_RS18065 (PsyrH_18440) - 4249349..4249972 (-) 624 WP_003346579.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80402.57 Da        Isoelectric Point: 9.9374

>NTDB_id=113028 PSYRH_RS18050 WP_046719753.1 4245095..4247311(-) (comA) [Pseudomonas syringae pv. syringae HS191]
MRTGMIALALGLLALRFLPALPPTWLLLLMPTLALMLLPFRTYPLALFLLGFTWACVSAQWALSDRLAPRLDGQTLWVQG
KVVGLPSVAEGVVRFELEGAWSRRAKLPARIRVAWYDGQPVNSGERWRMAVKLKRPSGLVNPDAFDYEAWLLAQRIGATG
TVVDGERLAPARAAWRDALRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPCFLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWRWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQWLFVFLDAVAAALPAWLPSAVPIWAWWLSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPEGQVDVMQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKTGVRHLDLMLISHSDADHAGGA
AAVHQAFPVSRVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCILSVDAGGERLLLAGDIDVSAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGAPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=113028 PSYRH_RS18050 WP_046719753.1 4245095..4247311(-) (comA) [Pseudomonas syringae pv. syringae HS191]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCGCTGCCGCCGACCTGGCTATT
GCTGCTGATGCCGACACTGGCGTTGATGCTGCTGCCGTTTCGTACCTATCCACTGGCGTTGTTCCTGCTCGGTTTCACCT
GGGCCTGCGTGTCGGCGCAGTGGGCGCTGAGTGACCGGTTGGCGCCGCGTCTCGATGGTCAGACGCTGTGGGTACAGGGC
AAGGTGGTCGGTTTGCCGAGTGTCGCCGAAGGTGTGGTGCGTTTCGAGCTGGAAGGCGCCTGGTCACGACGTGCCAAACT
GCCCGCGCGAATCCGGGTGGCCTGGTACGACGGCCAGCCCGTGAACAGCGGGGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGACCGTCCGGGCTGGTCAATCCCGATGCTTTCGACTATGAGGCCTGGCTGCTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTGGTGGATGGTGAGCGGTTGGCACCCGCGCGTGCCGCCTGGCGCGATGCCCTTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAAGGCGGTCTGGCAGCGCTGGTGCTGGGCGATGGCTCAGGGCTATCGAGCACCGACTGGCAGGTGT
TGCAGGATACCGGCACTGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCCGGGGTGATTTACGCTTTG
GTCGCAGGCTTGGCGCGCTGGGGGCTGTGGCCATGCTTTTTGCCCTGGCTGCCGTGGGCGTGTGCACTGGCGTTCAGCGC
TGCACTGGGCTACGGGCTGCTGGCCGGTTTCGAGGTGCCAGTCCGGCGCGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGCCATCTGGGCGTGGTCTGGCCCTTGTTGCTGTCCTTCAACGCGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTCGGCATTCTGATCCTGATTTTTAGCGGGCGTCTCGGCGC
CTGGCGCTGGTGGCAAAGCTGGACACGGGCGCAGTGGCTGATCGCCGTCGGCTTGTTGCCGATTCTGCTGGCGCTGAACT
TGCCGATCAGCCTCAGTGGGCCGTTTGCCAACTTGCTTGCCGTGCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGAACGCTGTTGCTGCCAGTCCCTGTGGTCGGCGAAGGTCTGCTATGGCTGGCGGGCGGGGCGCTGCAGTGGCTGTT
CGTGTTCCTCGACGCGGTGGCTGCCGCATTGCCGGCCTGGTTGCCCAGTGCGGTGCCAATCTGGGCATGGTGGTTGAGTT
TGCTCGGGGCCTTGCTCTTGTTGCTGCCCAAGGGCGTGCCAATGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAATCAGTGCCTGAAGGCCAGGTAGACGTGATGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACTCGCAATCACACACTTCTGTATGACGCAGGTCCGCGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTTGTGC
CCGCCATGCGCAAGACAGGCGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGCGGTGCG
GCGGCGGTTCATCAGGCCTTTCCGGTGAGCCGGGTGCTGGGTGGCGAGCTGGCCAGACTCGCCCCGCAACTCGACGCCCG
ATTGTGCGAGAGCGGTGCACGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ACCCCGCCTCCTGCATCCTCAGCGTCGACGCCGGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGACGTGAGCGCCGAG
CGCGCGGCAATCGACAGCGGGTTCGACCTGCGTGCCCACTGGTTGCAGTCGCCGCATCACGGCAGCCGGACCTCATCGTC
CAAAGCGTTTCTTCGCGCCGTCGCACCGGTCGGCGTGCTGATTTCCCGTGGTCGCAACAATGCGTTCGGTCACCCACACC
CGTTGGTCATGGCGCGCTATCGAGGCTTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCTGTGCGTCTGCAACTG
GGTACGTTCGGAGCGCCGCAGGCCGAGCGTGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.43

97.019

0.606
  comA Ralstonia pseudosolanacearum GMI1000

35.071

100

0.401

Multiple sequence alignment