Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSYRH_RS18045 Genome accession   NZ_CP006256
Coordinates   4244336..4245052 (-) Length   238 a.a.
NCBI ID   WP_003317467.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. syringae HS191     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4239336..4250052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYRH_RS18020 (PsyrH_18395) murB 4240895..4241914 (-) 1020 WP_044311729.1 UDP-N-acetylmuramate dehydrogenase -
  PSYRH_RS18025 (PsyrH_18400) kdsB 4241949..4242713 (-) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSYRH_RS18030 (PsyrH_18405) - 4242710..4242895 (-) 186 WP_002552679.1 Trm112 family protein -
  PSYRH_RS18035 (PsyrH_18410) lpxK 4242913..4243908 (-) 996 WP_024648606.1 tetraacyldisaccharide 4'-kinase -
  PSYRH_RS18040 (PsyrH_18415) - 4243908..4244339 (-) 432 WP_003317468.1 biopolymer transporter ExbD -
  PSYRH_RS18045 (PsyrH_18420) exbB 4244336..4245052 (-) 717 WP_003317467.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSYRH_RS18050 (PsyrH_18425) comA 4245095..4247311 (-) 2217 WP_046719753.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSYRH_RS18055 (PsyrH_18430) - 4247448..4248236 (-) 789 WP_003421319.1 ABC transporter permease -
  PSYRH_RS18060 (PsyrH_18435) - 4248233..4249165 (-) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  PSYRH_RS18065 (PsyrH_18440) - 4249349..4249972 (-) 624 WP_003346579.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25804.35 Da        Isoelectric Point: 7.9113

>NTDB_id=113027 PSYRH_RS18045 WP_003317467.1 4244336..4245052(-) (exbB) [Pseudomonas syringae pv. syringae HS191]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=113027 PSYRH_RS18045 WP_003317467.1 4244336..4245052(-) (exbB) [Pseudomonas syringae pv. syringae HS191]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTGGACGGCGAAAAACTCAAGCAGCTGCGCGCTGAC
TCGCCGCTGGGCGAAATCCTTGCCGCAGGTCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGA
AGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCTACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTG
GTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGTTCCGGGGCCACCGCCAACGCCGGCGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCGTCGGGTCTTATCGTCGCGATCCCGGCGATTTTCTTTCATCG
CTTCCTGCAGAGCCGCGTCGATGAGTTGGTGGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693

Multiple sequence alignment