Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1C95_RS22285 Genome accession   NZ_LR778153
Coordinates   4636650..4637186 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate SC480     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4631650..4642186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C95_RS22265 soxR 4633378..4633842 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  H1C95_RS22270 soxS 4633928..4634251 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  H1C95_RS22275 pdeC 4634254..4635840 (-) 1587 WP_000019539.1 c-di-GMP phosphodiesterase PdeC -
  H1C95_RS22280 yjcB 4636270..4636551 (+) 282 WP_001295689.1 YjcB family protein -
  H1C95_RS22285 ssb 4636650..4637186 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H1C95_RS22290 uvrA 4637440..4640262 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  H1C95_RS22295 yjbR 4640297..4640653 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  H1C95_RS22300 yjbQ 4640657..4641073 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H1C95_RS22305 aphA 4641184..4641897 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1130223 H1C95_RS22285 WP_000168305.1 4636650..4637186(-) (ssb) [Escherichia coli isolate SC480]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1130223 H1C95_RS22285 WP_000168305.1 4636650..4637186(-) (ssb) [Escherichia coli isolate SC480]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment