Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSYRH_RS03655 Genome accession   NZ_CP006256
Coordinates   803609..804172 (+) Length   187 a.a.
NCBI ID   WP_002555458.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. syringae HS191     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 798609..809172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYRH_RS03640 (PsyrH_03720) bfr 798681..799145 (+) 465 WP_003317095.1 bacterioferritin -
  PSYRH_RS03645 (PsyrH_03725) uvrA 799241..802075 (-) 2835 WP_003431812.1 excinuclease ABC subunit UvrA -
  PSYRH_RS03650 (PsyrH_03730) - 802205..803599 (+) 1395 WP_003431811.1 MFS transporter -
  PSYRH_RS03655 (PsyrH_03735) ssb 803609..804172 (+) 564 WP_002555458.1 single-stranded DNA-binding protein Machinery gene
  PSYRH_RS03660 (PsyrH_03740) - 804302..805414 (-) 1113 WP_046718924.1 endo-1,4-beta-xylanase -
  PSYRH_RS03665 (PsyrH_03745) - 805414..806157 (-) 744 WP_003317091.1 inositol monophosphatase family protein -
  PSYRH_RS03670 (PsyrH_03750) - 806154..806915 (-) 762 WP_003317090.1 glycerophosphoryl diester phosphodiesterase -
  PSYRH_RS03675 (PsyrH_03755) ugpC 806922..808028 (-) 1107 WP_004394159.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  PSYRH_RS03680 (PsyrH_03760) - 808025..808918 (-) 894 WP_003419594.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20804.92 Da        Isoelectric Point: 5.9404

>NTDB_id=113021 PSYRH_RS03655 WP_002555458.1 803609..804172(+) (ssb) [Pseudomonas syringae pv. syringae HS191]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDSQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
RDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=113021 PSYRH_RS03655 WP_002555458.1 803609..804172(+) (ssb) [Pseudomonas syringae pv. syringae HS191]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTCGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCTCAGGGCGACTCCCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCTC
GTCCACAGCAGTCGCGCCCACAACAATCGGCGCCGCAGCAGTCCGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTCGACAGCTTCGATGATGATATTCCGTT
CTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.974

100

0.561
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.476
  ssb Neisseria meningitidis MC58

45.161

99.465

0.449
  ssb Neisseria gonorrhoeae MS11

45.161

99.465

0.449

Multiple sequence alignment