Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1D09_RS14685 Genome accession   NZ_LR778152
Coordinates   3011568..3012104 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate SC477     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3006568..3017104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D09_RS14665 soxR 3008297..3008761 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  H1D09_RS14670 soxS 3008847..3009170 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  H1D09_RS14675 pdeC 3009206..3010759 (-) 1554 WP_001445406.1 c-di-GMP phosphodiesterase PdeC -
  H1D09_RS14680 yjcB 3011188..3011469 (+) 282 WP_001296643.1 YjcB family protein -
  H1D09_RS14685 ssb 3011568..3012104 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H1D09_RS14690 uvrA 3012359..3015181 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  H1D09_RS14695 yjbR 3015216..3015572 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  H1D09_RS14700 yjbQ 3015576..3015992 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H1D09_RS14705 aphA 3016103..3016816 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1130187 H1D09_RS14685 WP_000168305.1 3011568..3012104(-) (ssb) [Escherichia coli isolate SC477]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1130187 H1D09_RS14685 WP_000168305.1 3011568..3012104(-) (ssb) [Escherichia coli isolate SC477]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACGGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment