Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1C91_RS21000 Genome accession   NZ_LR778150
Coordinates   4400916..4401452 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate SC492     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4395916..4406452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C91_RS20980 soxR 4397644..4398108 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  H1C91_RS20985 soxS 4398194..4398517 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  H1C91_RS20990 pdeC 4398520..4400106 (-) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  H1C91_RS20995 yjcB 4400536..4400817 (+) 282 WP_001295689.1 YjcB family protein -
  H1C91_RS21000 ssb 4400916..4401452 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H1C91_RS21005 uvrA 4401706..4404528 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  H1C91_RS21010 yjbR 4404563..4404919 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  H1C91_RS21015 yjbQ 4404923..4405339 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H1C91_RS21020 aphA 4405450..4406163 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1130153 H1C91_RS21000 WP_000168305.1 4400916..4401452(-) (ssb) [Escherichia coli isolate SC492]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1130153 H1C91_RS21000 WP_000168305.1 4400916..4401452(-) (ssb) [Escherichia coli isolate SC492]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment