Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1C96_RS13000 Genome accession   NZ_LR778149
Coordinates   2685749..2686285 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate SC487     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2680749..2691285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C96_RS12980 soxR 2682477..2682941 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  H1C96_RS12985 soxS 2683027..2683350 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  H1C96_RS12990 pdeC 2683353..2684939 (-) 1587 WP_000019539.1 c-di-GMP phosphodiesterase PdeC -
  H1C96_RS12995 yjcB 2685369..2685650 (+) 282 WP_001295689.1 YjcB family protein -
  H1C96_RS13000 ssb 2685749..2686285 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H1C96_RS13005 uvrA 2686539..2689361 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  H1C96_RS13010 yjbR 2689396..2689752 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  H1C96_RS13015 yjbQ 2689756..2690172 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H1C96_RS13020 aphA 2690283..2690996 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1130119 H1C96_RS13000 WP_000168305.1 2685749..2686285(-) (ssb) [Escherichia coli isolate SC487]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1130119 H1C96_RS13000 WP_000168305.1 2685749..2686285(-) (ssb) [Escherichia coli isolate SC487]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment