Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1C74_RS07495 Genome accession   NZ_LR778148
Coordinates   1569942..1570478 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate SC475     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1564942..1575478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C74_RS07475 aphA 1565231..1565944 (+) 714 WP_001226928.1 acid phosphatase AphA -
  H1C74_RS07480 yjbQ 1566055..1566471 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H1C74_RS07485 yjbR 1566475..1566831 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  H1C74_RS07490 uvrA 1566866..1569688 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  H1C74_RS07495 ssb 1569942..1570478 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H1C74_RS07500 yjcB 1570577..1570858 (-) 282 WP_001295689.1 YjcB family protein -
  H1C74_RS07505 pdeC 1571288..1572874 (+) 1587 WP_000019539.1 c-di-GMP phosphodiesterase PdeC -
  H1C74_RS07510 soxS 1572877..1573200 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  H1C74_RS07515 soxR 1573286..1573750 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1130105 H1C74_RS07495 WP_000168305.1 1569942..1570478(+) (ssb) [Escherichia coli isolate SC475]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1130105 H1C74_RS07495 WP_000168305.1 1569942..1570478(+) (ssb) [Escherichia coli isolate SC475]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment