Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1D11_RS00450 Genome accession   NZ_LR778147
Coordinates   108114..108650 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate SC418     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 103114..113650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D11_RS00430 soxR 104842..105306 (-) 465 WP_096931239.1 redox-sensitive transcriptional activator SoxR -
  H1D11_RS00435 soxS 105392..105715 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  H1D11_RS00440 pdeC 105718..107304 (-) 1587 WP_115423442.1 c-di-GMP phosphodiesterase PdeC -
  H1D11_RS00445 yjcB 107734..108015 (+) 282 WP_001295689.1 YjcB family protein -
  H1D11_RS00450 ssb 108114..108650 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H1D11_RS00455 uvrA 108904..111726 (+) 2823 WP_000357731.1 excinuclease ABC subunit UvrA -
  H1D11_RS00460 yjbR 111761..112117 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  H1D11_RS00465 yjbQ 112121..112537 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H1D11_RS00470 aphA 112648..113361 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1130070 H1D11_RS00450 WP_000168305.1 108114..108650(-) (ssb) [Escherichia coli isolate SC418]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1130070 H1D11_RS00450 WP_000168305.1 108114..108650(-) (ssb) [Escherichia coli isolate SC418]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment