Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1D08_RS14680 Genome accession   NZ_LR778146
Coordinates   3008272..3008808 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate SC455     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3003272..3013808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D08_RS14660 soxR 3005000..3005464 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  H1D08_RS14665 soxS 3005550..3005873 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  H1D08_RS14670 pdeC 3005909..3007463 (-) 1555 Protein_2905 c-di-GMP phosphodiesterase PdeC -
  H1D08_RS14675 yjcB 3007892..3008173 (+) 282 WP_001296643.1 YjcB family protein -
  H1D08_RS14680 ssb 3008272..3008808 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H1D08_RS14685 uvrA 3009063..3011885 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  H1D08_RS14690 yjbR 3011920..3012276 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  H1D08_RS14695 yjbQ 3012280..3012696 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H1D08_RS14700 aphA 3012807..3013520 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1130054 H1D08_RS14680 WP_000168305.1 3008272..3008808(-) (ssb) [Escherichia coli isolate SC455]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1130054 H1D08_RS14680 WP_000168305.1 3008272..3008808(-) (ssb) [Escherichia coli isolate SC455]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACGGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment