Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1C98_RS05280 Genome accession   NZ_LR778143
Coordinates   1091957..1092493 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate SC422     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1086957..1097493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C98_RS05260 soxR 1088685..1089149 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  H1C98_RS05265 soxS 1089235..1089558 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  H1C98_RS05270 pdeC 1089561..1091147 (-) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  H1C98_RS05275 yjcB 1091577..1091858 (+) 282 WP_001295689.1 YjcB family protein -
  H1C98_RS05280 ssb 1091957..1092493 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H1C98_RS05285 uvrA 1092747..1095569 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  H1C98_RS05290 yjbR 1095604..1095960 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  H1C98_RS05295 yjbQ 1095964..1096380 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H1C98_RS05300 aphA 1096491..1097204 (-) 714 WP_001315956.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1130004 H1C98_RS05280 WP_000168305.1 1091957..1092493(-) (ssb) [Escherichia coli isolate SC422]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1130004 H1C98_RS05280 WP_000168305.1 1091957..1092493(-) (ssb) [Escherichia coli isolate SC422]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment