Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1D10_RS00530 Genome accession   NZ_LR778142
Coordinates   118352..118888 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate SC434     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 113352..123888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D10_RS00510 aphA 113640..114353 (+) 714 WP_001226933.1 acid phosphatase AphA -
  H1D10_RS00515 yjbQ 114464..114880 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H1D10_RS00520 yjbR 114884..115240 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  H1D10_RS00525 uvrA 115275..118097 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  H1D10_RS00530 ssb 118352..118888 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H1D10_RS00535 yjcB 118987..119268 (-) 282 WP_001296643.1 YjcB family protein -
  H1D10_RS00540 pdeC 119697..121250 (+) 1554 WP_001445406.1 c-di-GMP phosphodiesterase PdeC -
  H1D10_RS00545 soxS 121286..121609 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  H1D10_RS00550 soxR 121695..122159 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1129978 H1D10_RS00530 WP_000168305.1 118352..118888(+) (ssb) [Escherichia coli isolate SC434]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1129978 H1D10_RS00530 WP_000168305.1 118352..118888(+) (ssb) [Escherichia coli isolate SC434]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACGGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment