Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1C92_RS19510 Genome accession   NZ_LR778141
Coordinates   4022407..4022943 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate SC407     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4017407..4027943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C92_RS19490 aphA 4017696..4018409 (+) 714 WP_001315956.1 acid phosphatase AphA -
  H1C92_RS19495 yjbQ 4018520..4018936 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H1C92_RS19500 yjbR 4018940..4019296 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  H1C92_RS19505 uvrA 4019331..4022153 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  H1C92_RS19510 ssb 4022407..4022943 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H1C92_RS19515 yjcB 4023042..4023323 (-) 282 WP_001295689.1 YjcB family protein -
  H1C92_RS19520 pdeC 4023753..4025339 (+) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  H1C92_RS19525 soxS 4025342..4025665 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  H1C92_RS19530 soxR 4025751..4026215 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1129975 H1C92_RS19510 WP_000168305.1 4022407..4022943(+) (ssb) [Escherichia coli isolate SC407]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1129975 H1C92_RS19510 WP_000168305.1 4022407..4022943(+) (ssb) [Escherichia coli isolate SC407]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment