Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1C94_RS22190 Genome accession   NZ_LR778140
Coordinates   4614103..4614639 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate SC406     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4609103..4619639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C94_RS22170 soxR 4610830..4611294 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  H1C94_RS22175 soxS 4611380..4611703 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  H1C94_RS22180 pdeC 4611706..4613292 (-) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  H1C94_RS22185 yjcB 4613723..4614004 (+) 282 WP_001295689.1 YjcB family protein -
  H1C94_RS22190 ssb 4614103..4614639 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H1C94_RS22195 uvrA 4614893..4617715 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  H1C94_RS22200 yjbR 4617750..4618106 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  H1C94_RS22205 yjbQ 4618110..4618526 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H1C94_RS22210 aphA 4618637..4619350 (-) 714 WP_001315956.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1129952 H1C94_RS22190 WP_000168305.1 4614103..4614639(-) (ssb) [Escherichia coli isolate SC406]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1129952 H1C94_RS22190 WP_000168305.1 4614103..4614639(-) (ssb) [Escherichia coli isolate SC406]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment