Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BAMY6639_RS10575 Genome accession   NZ_CP006058
Coordinates   2165911..2166429 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2152863..2166756 2165911..2166429 within 0


Gene organization within MGE regions


Location: 2152863..2166756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS10510 (BAMY6639_11110) - 2152863..2153771 (-) 909 WP_032875365.1 LysR family transcriptional regulator -
  BAMY6639_RS10515 (BAMY6639_11115) - 2153890..2154675 (+) 786 WP_007409884.1 3-hydroxybutyrate dehydrogenase -
  BAMY6639_RS10520 (BAMY6639_11125) - 2154929..2156377 (-) 1449 WP_015418637.1 PLP-dependent aminotransferase family protein -
  BAMY6639_RS10525 (BAMY6639_11130) - 2156506..2157417 (+) 912 WP_061861073.1 DMT family transporter -
  BAMY6639_RS10530 (BAMY6639_11135) - 2157567..2159636 (+) 2070 WP_061861074.1 thioredoxin domain-containing protein -
  BAMY6639_RS10535 (BAMY6639_11140) - 2159633..2160529 (-) 897 WP_053573843.1 CPBP family intramembrane glutamic endopeptidase -
  BAMY6639_RS10540 (BAMY6639_11145) - 2160743..2162074 (+) 1332 WP_061861075.1 MFS transporter -
  BAMY6639_RS10545 (BAMY6639_11150) - 2162107..2162487 (-) 381 WP_039253120.1 VOC family protein -
  BAMY6639_RS10550 (BAMY6639_11155) - 2162544..2163482 (-) 939 WP_061861076.1 LacI family DNA-binding transcriptional regulator -
  BAMY6639_RS10555 (BAMY6639_11160) xth 2163545..2164303 (-) 759 WP_033574264.1 exodeoxyribonuclease III -
  BAMY6639_RS10560 (BAMY6639_11165) - 2164300..2164857 (-) 558 WP_061861077.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  BAMY6639_RS10565 (BAMY6639_11170) - 2164854..2165435 (-) 582 WP_039253109.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  BAMY6639_RS10570 (BAMY6639_11175) rpsR 2165628..2165867 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  BAMY6639_RS10575 (BAMY6639_11180) ssbA 2165911..2166429 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  BAMY6639_RS10580 (BAMY6639_11185) rpsF 2166469..2166756 (-) 288 WP_004392977.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=112978 BAMY6639_RS10575 WP_004392979.1 2165911..2166429(-) (ssbA) [Bacillus amyloliquefaciens UMAF6639]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=112978 BAMY6639_RS10575 WP_004392979.1 2165911..2166429(-) (ssbA) [Bacillus amyloliquefaciens UMAF6639]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment