Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   BAMY6639_RS07950 Genome accession   NZ_CP006058
Coordinates   1639501..1640664 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1634501..1645664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS07920 (BAMY6639_08345) - 1634766..1635185 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  BAMY6639_RS07925 (BAMY6639_08350) comFC 1635259..1635948 (-) 690 WP_198039463.1 phosphoribosyltransferase family protein Machinery gene
  BAMY6639_RS07930 (BAMY6639_08355) - 1635954..1636238 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAMY6639_RS07935 (BAMY6639_08360) comFA 1636296..1637681 (-) 1386 WP_061860920.1 DEAD/DEAH box helicase Machinery gene
  BAMY6639_RS07940 (BAMY6639_08365) - 1637789..1638637 (-) 849 WP_061860921.1 DegV family protein -
  BAMY6639_RS07945 (BAMY6639_08370) degU 1638735..1639424 (-) 690 WP_061860922.1 two-component system response regulator DegU Regulator
  BAMY6639_RS07950 (BAMY6639_08375) degS 1639501..1640664 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAMY6639_RS07955 (BAMY6639_08380) - 1640887..1641534 (+) 648 WP_007614107.1 YigZ family protein -
  BAMY6639_RS07960 (BAMY6639_08385) - 1641539..1642753 (+) 1215 WP_061860923.1 LCP family protein -
  BAMY6639_RS07965 (BAMY6639_08390) - 1642843..1643919 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  BAMY6639_RS07970 (BAMY6639_08395) tuaH 1644052..1645248 (-) 1197 WP_061860924.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=112970 BAMY6639_RS07950 WP_007407484.1 1639501..1640664(-) (degS) [Bacillus amyloliquefaciens UMAF6639]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=112970 BAMY6639_RS07950 WP_007407484.1 1639501..1640664(-) (degS) [Bacillus amyloliquefaciens UMAF6639]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTAGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCGTTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTGGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGTTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951

Multiple sequence alignment