Detailed information NTG0112967

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: BAMY6639_RS07925
• Genome accession: NZ_CP006058
• Coordinates: 1635259..1635948 (-)
• Length: 229 a.a.
• NCBI ID: WP_198039463.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens UMAF6639
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1630259..1640948

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6639_RS07890 (BAMY6639_08315)	fliW	1630350..1630781 (-)	432	WP_007407475.1	flagellar assembly protein FliW	-
BAMY6639_RS07895 (BAMY6639_08320)	-	1630811..1631380 (-)	570	WP_007407476.1	DUF6470 family protein	-
BAMY6639_RS07900 (BAMY6639_08325)	flgL	1631471..1632388 (-)	918	WP_003151396.1	flagellar hook-associated protein FlgL	-
BAMY6639_RS07905 (BAMY6639_08330)	flgK	1632400..1633917 (-)	1518	WP_032869556.1	flagellar hook-associated protein FlgK	-
BAMY6639_RS07910 (BAMY6639_08335)	-	1633933..1634415 (-)	483	WP_003151394.1	flagellar protein FlgN	-
BAMY6639_RS07915 (BAMY6639_08340)	flgM	1634430..1634696 (-)	267	WP_003151393.1	flagellar biosynthesis anti-sigma factor FlgM	-
BAMY6639_RS07920 (BAMY6639_08345)	-	1634766..1635185 (-)	420	WP_025285352.1	TIGR03826 family flagellar region protein	-
BAMY6639_RS07925 (BAMY6639_08350)	comFC	1635259..1635948 (-)	690	WP_198039463.1	phosphoribosyltransferase family protein	Machinery gene
BAMY6639_RS07930 (BAMY6639_08355)	-	1635954..1636238 (-)	285	WP_003151389.1	late competence development ComFB family protein	-
BAMY6639_RS07935 (BAMY6639_08360)	comFA	1636296..1637681 (-)	1386	WP_061860920.1	DEAD/DEAH box helicase	Machinery gene
BAMY6639_RS07940 (BAMY6639_08365)	-	1637789..1638637 (-)	849	WP_061860921.1	DegV family protein	-
BAMY6639_RS07945 (BAMY6639_08370)	degU	1638735..1639424 (-)	690	WP_061860922.1	two-component system response regulator DegU	Regulator
BAMY6639_RS07950 (BAMY6639_08375)	degS	1639501..1640664 (-)	1164	WP_007407484.1	two-component sensor histidine kinase DegS	Regulator

Sequence

Protein

• Length: 229 a.a.
• Molecular weight: 25331.03 Da
• Isoelectric Point: 8.2921

>NTDB_id=112967 BAMY6639_RS07925 WP_198039463.1 1635259..1635948(-) (comFC) [Bacillus amyloliquefaciens UMAF6639]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPLCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNKHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide

• Length: 690 bp

>NTDB_id=112967 BAMY6639_RS07925 WP_198039463.1 1635259..1635948(-) (comFC) [Bacillus amyloliquefaciens UMAF6639]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCTTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGTGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATAAACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (144-227)

• Double zinc ribbon domain (DZR_2) (2-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	59.912	99.127	0.594