Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BAMY6639_RS07945 Genome accession   NZ_CP006058
Coordinates   1638735..1639424 (-) Length   229 a.a.
NCBI ID   WP_061860922.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1633735..1644424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS07910 (BAMY6639_08335) - 1633933..1634415 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BAMY6639_RS07915 (BAMY6639_08340) flgM 1634430..1634696 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAMY6639_RS07920 (BAMY6639_08345) - 1634766..1635185 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  BAMY6639_RS07925 (BAMY6639_08350) comFC 1635259..1635948 (-) 690 WP_198039463.1 phosphoribosyltransferase family protein Machinery gene
  BAMY6639_RS07930 (BAMY6639_08355) - 1635954..1636238 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAMY6639_RS07935 (BAMY6639_08360) comFA 1636296..1637681 (-) 1386 WP_061860920.1 DEAD/DEAH box helicase Machinery gene
  BAMY6639_RS07940 (BAMY6639_08365) - 1637789..1638637 (-) 849 WP_061860921.1 DegV family protein -
  BAMY6639_RS07945 (BAMY6639_08370) degU 1638735..1639424 (-) 690 WP_061860922.1 two-component system response regulator DegU Regulator
  BAMY6639_RS07950 (BAMY6639_08375) degS 1639501..1640664 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAMY6639_RS07955 (BAMY6639_08380) - 1640887..1641534 (+) 648 WP_007614107.1 YigZ family protein -
  BAMY6639_RS07960 (BAMY6639_08385) - 1641539..1642753 (+) 1215 WP_061860923.1 LCP family protein -
  BAMY6639_RS07965 (BAMY6639_08390) - 1642843..1643919 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25894.62 Da        Isoelectric Point: 5.9446

>NTDB_id=112969 BAMY6639_RS07945 WP_061860922.1 1638735..1639424(-) (degU) [Bacillus amyloliquefaciens UMAF6639]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSVHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=112969 BAMY6639_RS07945 WP_061860922.1 1638735..1639424(-) (degU) [Bacillus amyloliquefaciens UMAF6639]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGTTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment