Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BAMY6639_RS07935 Genome accession   NZ_CP006058
Coordinates   1636296..1637681 (-) Length   461 a.a.
NCBI ID   WP_061860920.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1631296..1642681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS07900 (BAMY6639_08325) flgL 1631471..1632388 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  BAMY6639_RS07905 (BAMY6639_08330) flgK 1632400..1633917 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  BAMY6639_RS07910 (BAMY6639_08335) - 1633933..1634415 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BAMY6639_RS07915 (BAMY6639_08340) flgM 1634430..1634696 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAMY6639_RS07920 (BAMY6639_08345) - 1634766..1635185 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  BAMY6639_RS07925 (BAMY6639_08350) comFC 1635259..1635948 (-) 690 WP_198039463.1 phosphoribosyltransferase family protein Machinery gene
  BAMY6639_RS07930 (BAMY6639_08355) - 1635954..1636238 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAMY6639_RS07935 (BAMY6639_08360) comFA 1636296..1637681 (-) 1386 WP_061860920.1 DEAD/DEAH box helicase Machinery gene
  BAMY6639_RS07940 (BAMY6639_08365) - 1637789..1638637 (-) 849 WP_061860921.1 DegV family protein -
  BAMY6639_RS07945 (BAMY6639_08370) degU 1638735..1639424 (-) 690 WP_061860922.1 two-component system response regulator DegU Regulator
  BAMY6639_RS07950 (BAMY6639_08375) degS 1639501..1640664 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAMY6639_RS07955 (BAMY6639_08380) - 1640887..1641534 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52528.86 Da        Isoelectric Point: 9.9923

>NTDB_id=112968 BAMY6639_RS07935 WP_061860920.1 1636296..1637681(-) (comFA) [Bacillus amyloliquefaciens UMAF6639]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVDVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGQLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFCGDVVMFHFGMTNGMKQAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=112968 BAMY6639_RS07935 WP_061860920.1 1636296..1637681(-) (comFA) [Bacillus amyloliquefaciens UMAF6639]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCTTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCCGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTAGACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCAACTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCTGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAACAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(327-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.478

99.783

0.633

Multiple sequence alignment