Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GPW48_RS06625 Genome accession   NZ_LR738720
Coordinates   1287702..1288643 (-) Length   313 a.a.
NCBI ID   WP_024405765.1    Uniprot ID   A0AAP6DTB3
Organism   Streptococcus suis isolate GD-0001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1282702..1293643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW48_RS06600 prsA 1282808..1283809 (-) 1002 WP_074390229.1 peptidylprolyl isomerase PrsA -
  GPW48_RS06605 - 1283870..1284589 (-) 720 WP_074390279.1 O-methyltransferase -
  GPW48_RS06610 - 1284664..1285212 (-) 549 WP_002938103.1 DUF6630 family protein -
  GPW48_RS06615 - 1285228..1285668 (-) 441 WP_044758942.1 hypothetical protein -
  GPW48_RS06620 pepF 1285670..1287472 (-) 1803 WP_074390228.1 oligoendopeptidase F Regulator
  GPW48_RS06625 coiA 1287702..1288643 (-) 942 WP_024405765.1 competence protein CoiA Machinery gene
  GPW48_RS06630 metG 1288704..1290707 (-) 2004 WP_024405764.1 methionine--tRNA ligase -
  GPW48_RS06635 - 1290864..1291457 (+) 594 WP_024405763.1 DUF1361 domain-containing protein -
  GPW48_RS06640 - 1291757..1292794 (+) 1038 WP_012027206.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36294.89 Da        Isoelectric Point: 7.8956

>NTDB_id=1129399 GPW48_RS06625 WP_024405765.1 1287702..1288643(-) (coiA) [Streptococcus suis isolate GD-0001]
MLVALDEDGQVFNVLEHPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKFFPFGEGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1129399 GPW48_RS06625 WP_024405765.1 1287702..1288643(-) (coiA) [Streptococcus suis isolate GD-0001]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAACATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTACGGGATTGCA
CATACTTTTCCGAGAATGAGTCAGCCCAGCATCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGTTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTACCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(20-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.885

99.681

0.527
  coiA Streptococcus pneumoniae TIGR4

50.962

99.681

0.508
  coiA Streptococcus pneumoniae Rx1

50.962

99.681

0.508
  coiA Streptococcus pneumoniae D39

50.962

99.681

0.508
  coiA Streptococcus pneumoniae R6

50.962

99.681

0.508
  coiA Lactococcus lactis subsp. cremoris KW2

41.562

100

0.425

Multiple sequence alignment