Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   FXY05_RS07655 Genome accession   NZ_LR698956
Coordinates   1539417..1540379 (-) Length   320 a.a.
NCBI ID   WP_014534693.1    Uniprot ID   -
Organism   Helicobacter pylori isolate MGYG-HGUT-01357     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1534417..1545379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXY05_RS07635 - 1534722..1535654 (-) 933 WP_001002432.1 GDP-L-fucose synthase family protein -
  FXY05_RS07640 gmd 1535647..1536792 (-) 1146 WP_041201291.1 GDP-mannose 4,6-dehydratase -
  FXY05_RS07645 - 1536806..1538218 (-) 1413 WP_000694826.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  FXY05_RS07650 comB10 1538288..1539424 (-) 1137 WP_001045733.1 DNA type IV secretion system protein ComB10 Machinery gene
  FXY05_RS07655 comB9 1539417..1540379 (-) 963 WP_014534693.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  FXY05_RS07660 comB8 1540379..1541122 (-) 744 WP_000660529.1 type IV secretion system protein Machinery gene
  FXY05_RS07665 comB7 1541119..1541232 (-) 114 WP_001217868.1 hypothetical protein Machinery gene
  FXY05_RS07670 comB6 1541248..1542303 (-) 1056 WP_000786700.1 P-type conjugative transfer protein TrbL Machinery gene
  FXY05_RS07675 - 1542311..1543306 (-) 996 WP_000468806.1 PDZ domain-containing protein -
  FXY05_RS07680 - 1543306..1543599 (-) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  FXY05_RS07685 panD 1543610..1543960 (-) 351 WP_000142214.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 36801.33 Da        Isoelectric Point: 9.3455

>NTDB_id=1128676 FXY05_RS07655 WP_014534693.1 1539417..1540379(-) (comB9) [Helicobacter pylori isolate MGYG-HGUT-01357]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=1128676 FXY05_RS07655 WP_014534693.1 1539417..1540379(-) (comB9) [Helicobacter pylori isolate MGYG-HGUT-01357]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATATTAGAGAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAGGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGTGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCAGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTAGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

94.785

100

0.966

Multiple sequence alignment