Detailed information NTG1128675

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: FXY05_RS07650
• Genome accession: NZ_LR698956
• Coordinates: 1538288..1539424 (-)
• Length: 378 a.a.
• NCBI ID: WP_001045733.1
• Uniprot ID: -
• Organism: Helicobacter pylori isolate MGYG-HGUT-01357
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1533288..1544424

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FXY05_RS07630	hypE	1533475..1534473 (+)	999	WP_000378876.1	hydrogenase expression/formation protein HypE	-
FXY05_RS07635	-	1534722..1535654 (-)	933	WP_001002432.1	GDP-L-fucose synthase family protein	-
FXY05_RS07640	gmd	1535647..1536792 (-)	1146	WP_041201291.1	GDP-mannose 4,6-dehydratase	-
FXY05_RS07645	-	1536806..1538218 (-)	1413	WP_000694826.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
FXY05_RS07650	comB10	1538288..1539424 (-)	1137	WP_001045733.1	DNA type IV secretion system protein ComB10	Machinery gene
FXY05_RS07655	comB9	1539417..1540379 (-)	963	WP_014534693.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
FXY05_RS07660	comB8	1540379..1541122 (-)	744	WP_000660529.1	type IV secretion system protein	Machinery gene
FXY05_RS07665	comB7	1541119..1541232 (-)	114	WP_001217868.1	hypothetical protein	Machinery gene
FXY05_RS07670	comB6	1541248..1542303 (-)	1056	WP_000786700.1	P-type conjugative transfer protein TrbL	Machinery gene
FXY05_RS07675	-	1542311..1543306 (-)	996	WP_000468806.1	PDZ domain-containing protein	-
FXY05_RS07680	-	1543306..1543599 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
FXY05_RS07685	panD	1543610..1543960 (-)	351	WP_000142214.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42082.62 Da
• Isoelectric Point: 9.9924

>NTDB_id=1128675 FXY05_RS07650 WP_001045733.1 1538288..1539424(-) (comB10) [Helicobacter pylori isolate MGYG-HGUT-01357]
MNKWIKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINITLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=1128675 FXY05_RS07650 WP_001045733.1 1538288..1539424(-) (comB10) [Helicobacter pylori isolate MGYG-HGUT-01357]
ATGAATAAGTGGATTAAAGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACCCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCTGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCACGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.296	100	0.963