Detailed information NTG1128679

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: FXY05_RS07670
• Genome accession: NZ_LR698956
• Coordinates: 1541248..1542303 (-)
• Length: 351 a.a.
• NCBI ID: WP_000786700.1
• Uniprot ID: -
• Organism: Helicobacter pylori isolate MGYG-HGUT-01357
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1536248..1547303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FXY05_RS07645	-	1536806..1538218 (-)	1413	WP_000694826.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
FXY05_RS07650	comB10	1538288..1539424 (-)	1137	WP_001045733.1	DNA type IV secretion system protein ComB10	Machinery gene
FXY05_RS07655	comB9	1539417..1540379 (-)	963	WP_014534693.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
FXY05_RS07660	comB8	1540379..1541122 (-)	744	WP_000660529.1	type IV secretion system protein	Machinery gene
FXY05_RS07665	comB7	1541119..1541232 (-)	114	WP_001217868.1	hypothetical protein	Machinery gene
FXY05_RS07670	comB6	1541248..1542303 (-)	1056	WP_000786700.1	P-type conjugative transfer protein TrbL	Machinery gene
FXY05_RS07675	-	1542311..1543306 (-)	996	WP_000468806.1	PDZ domain-containing protein	-
FXY05_RS07680	-	1543306..1543599 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
FXY05_RS07685	panD	1543610..1543960 (-)	351	WP_000142214.1	aspartate 1-decarboxylase	-
FXY05_RS07690	-	1543950..1546172 (-)	2223	WP_001051538.1	AAA family ATPase	-
FXY05_RS07695	-	1546172..1546447 (-)	276	WP_000784916.1	ATP-dependent Clp protease adaptor ClpS	-
FXY05_RS07700	-	1546467..1546880 (-)	414	WP_001022996.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39871.81 Da
• Isoelectric Point: 8.8165

>NTDB_id=1128679 FXY05_RS07670 WP_000786700.1 1541248..1542303(-) (comB6) [Helicobacter pylori isolate MGYG-HGUT-01357]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVVCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSSVSASTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=1128679 FXY05_RS07670 WP_000786700.1 1541248..1542303(-) (comB6) [Helicobacter pylori isolate MGYG-HGUT-01357]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCAATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGTTAGTGCGCTAACAGAAGCGTTATTGTTTGTGGGATTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGTGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGCTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAATCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTGCTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972