Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PAKAF_RS23885 | Genome accession | NZ_LR657304 |
| Coordinates | 5181447..5182319 (+) | Length | 290 a.a. |
| NCBI ID | WP_003125204.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa PAK | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5176447..5187319
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PAKAF_RS23860 (PAKAF_04795) | nadC | 5176802..5177650 (+) | 849 | WP_003116246.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| PAKAF_RS23870 (PAKAF_05939) | pilA | 5177838..5178290 (-) | 453 | WP_024947914.1 | pilin | Machinery gene |
| PAKAF_RS23875 (PAKAF_04797) | pilB | 5178519..5180219 (+) | 1701 | WP_009875880.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PAKAF_RS23880 (PAKAF_04798) | pilC | 5180223..5181443 (+) | 1221 | WP_016253888.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| PAKAF_RS23885 (PAKAF_04799) | pilD | 5181447..5182319 (+) | 873 | WP_003125204.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PAKAF_RS23890 (PAKAF_04800) | coaE | 5182316..5182927 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| PAKAF_RS23895 (PAKAF_04801) | yacG | 5182924..5183124 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PAKAF_RS23900 (PAKAF_04802) | - | 5183161..5183370 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| PAKAF_RS23905 (PAKAF_04803) | - | 5183476..5184165 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| PAKAF_RS23910 (PAKAF_04804) | - | 5184162..5184632 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| PAKAF_RS23915 (PAKAF_04805) | - | 5184629..5185054 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| PAKAF_RS23920 (PAKAF_04806) | - | 5185187..5185816 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| PAKAF_RS23925 | - | 5185813..5186262 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| PAKAF_RS23930 (PAKAF_04808) | - | 5186288..5186458 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31839.89 Da Isoelectric Point: 7.7068
>NTDB_id=1128570 PAKAF_RS23885 WP_003125204.1 5181447..5182319(+) (pilD) [Pseudomonas aeruginosa PAK]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=1128570 PAKAF_RS23885 WP_003125204.1 5181447..5182319(+) (pilD) [Pseudomonas aeruginosa PAK]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |