Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ECMAD3_RS21225 Genome accession   NZ_LR595691
Coordinates   4391006..4391542 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate EcMAD1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4386006..4396542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECMAD3_RS21205 (ECMAD_04282) aphA 4386295..4387008 (+) 714 WP_001307512.1 acid phosphatase AphA -
  ECMAD3_RS21210 (ECMAD_04283) yjbQ 4387119..4387535 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ECMAD3_RS21215 (ECMAD_04284) yjbR 4387539..4387895 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ECMAD3_RS21220 (ECMAD_04285) uvrA 4387930..4390752 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  ECMAD3_RS21225 (ECMAD_04286) ssb 4391006..4391542 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ECMAD3_RS21230 (ECMAD_04287) yjcB 4391641..4391922 (-) 282 WP_001295689.1 YjcB family protein -
  ECMAD3_RS21235 (ECMAD_04288) pdeC 4392352..4393227 (+) 876 Protein_4137 c-di-GMP phosphodiesterase PdeC -
  ECMAD3_RS21240 - 4393283..4393980 (+) 698 WP_226926670.1 IS1 family transposase -
  ECMAD3_RS21245 (ECMAD_04290) pdeC 4393995..4394714 (+) 720 Protein_4139 c-di-GMP phosphodiesterase PdeC -
  ECMAD3_RS21250 (ECMAD_04291) soxS 4394717..4395040 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ECMAD3_RS21255 (ECMAD_04292) soxR 4395126..4395590 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1128298 ECMAD3_RS21225 WP_000168305.1 4391006..4391542(+) (ssb) [Escherichia coli isolate EcMAD1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1128298 ECMAD3_RS21225 WP_000168305.1 4391006..4391542(+) (ssb) [Escherichia coli isolate EcMAD1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment