Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E5P1_RS13935 Genome accession   NZ_LR594689
Coordinates   2839537..2840076 (-) Length   179 a.a.
NCBI ID   WP_068684777.1    Uniprot ID   -
Organism   Variovorax sp. WDL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2834537..2845076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5P1_RS13920 (G3W93_RS13940) - 2835483..2837705 (-) 2223 WP_068684771.1 polysaccharide biosynthesis tyrosine autokinase -
  E5P1_RS13925 (G3W93_RS13945) - 2837702..2838181 (-) 480 WP_068684773.1 low molecular weight protein-tyrosine-phosphatase -
  E5P1_RS13930 (G3W93_RS13950) - 2838178..2839149 (-) 972 WP_232081175.1 polysaccharide biosynthesis/export family protein -
  E5P1_RS13935 (G3W93_RS13955) ssb 2839537..2840076 (-) 540 WP_068684777.1 single-stranded DNA-binding protein Machinery gene
  E5P1_RS13940 (G3W93_RS13960) - 2840198..2841574 (+) 1377 WP_068684779.1 chloride channel protein -
  E5P1_RS13945 (G3W93_RS13965) uvrA 2841637..2844684 (+) 3048 WP_068684781.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19065.03 Da        Isoelectric Point: 5.9526

>NTDB_id=1128266 E5P1_RS13935 WP_068684777.1 2839537..2840076(-) (ssb) [Variovorax sp. WDL1]
MASVNKVILVGNLGRDPETRTFPSGDQICNVTLATTDKWKDKQSGEMREATEWHRLVFNGRLAEIAAQYLRKGSQIYVEG
QIRTRKYTDKDGVEKYATDIRVDQMQMLGSRQGQGAPSGEDEGGYGGGYSQGGAGGGGGSGYSRPPAAAPRAPAASPAAR
QAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1128266 E5P1_RS13935 WP_068684777.1 2839537..2840076(-) (ssb) [Variovorax sp. WDL1]
ATGGCATCGGTCAACAAAGTCATCCTCGTCGGAAACCTCGGGCGCGACCCCGAAACCCGCACCTTCCCGAGCGGTGACCA
GATCTGCAACGTGACCCTGGCAACCACCGACAAGTGGAAGGACAAGCAGAGCGGCGAGATGCGCGAAGCCACCGAGTGGC
ACCGCCTGGTGTTCAACGGCCGGCTGGCCGAGATCGCCGCGCAGTACCTGCGCAAGGGCTCGCAGATCTACGTCGAGGGC
CAGATTCGCACGCGCAAGTACACCGACAAGGATGGCGTCGAGAAGTACGCCACCGACATCCGCGTCGATCAGATGCAGAT
GCTGGGCAGCCGCCAGGGGCAGGGCGCGCCCTCGGGCGAAGACGAGGGCGGCTATGGCGGCGGTTACTCGCAGGGCGGCG
CTGGCGGCGGCGGTGGCAGTGGCTACTCGCGCCCGCCCGCCGCGGCACCGCGCGCCCCGGCCGCATCGCCGGCTGCGCGC
CAGGCACCGGCCAAGTCCTCGTCCGGCTTCGACGACATGGACGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.632

100

0.503
  ssb Vibrio cholerae strain A1552

44.792

100

0.48
  ssb Neisseria meningitidis MC58

45.856

100

0.464
  ssb Neisseria gonorrhoeae MS11

45.856

100

0.464

Multiple sequence alignment