Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E5CHR_RS28595 Genome accession   NZ_LR594675
Coordinates   6006285..6006809 (-) Length   174 a.a.
NCBI ID   WP_162583147.1    Uniprot ID   A0A6P2FQB8
Organism   Variovorax sp. PBS-H4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6001285..6011809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5CHR_RS28580 (H4CHR_05707) - 6002227..6004446 (-) 2220 WP_162583144.1 polysaccharide biosynthesis tyrosine autokinase -
  E5CHR_RS28585 (H4CHR_05708) - 6004443..6004922 (-) 480 WP_162583145.1 low molecular weight protein-tyrosine-phosphatase -
  E5CHR_RS28590 (H4CHR_05709) - 6004919..6006052 (-) 1134 WP_162583146.1 polysaccharide biosynthesis/export family protein -
  E5CHR_RS28595 (H4CHR_05710) ssb 6006285..6006809 (-) 525 WP_162583147.1 single-stranded DNA-binding protein Machinery gene
  E5CHR_RS28600 (H4CHR_05711) - 6006930..6008306 (+) 1377 WP_162583148.1 chloride channel protein -
  E5CHR_RS28605 (H4CHR_05712) uvrA 6008447..6011416 (+) 2970 WP_232062331.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18615.56 Da        Isoelectric Point: 5.9428

>NTDB_id=1128255 E5CHR_RS28595 WP_162583147.1 6006285..6006809(-) (ssb) [Variovorax sp. PBS-H4]
MASVNKVILVGNLGRDPETRTFPSGDQICNVTLATTDKWKDKQSGEMREATEWHRLVFNGRLAEIAAQYLRKGSQIYVEG
QIRTRKYTDKDGVEKFATDIRVDQMQMLGSRQGQGAPSGDDDGGYGGGSSQGGGGGYSRPPAAAPRAPAASPAARQAPAK
SSSGFDDMDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1128255 E5CHR_RS28595 WP_162583147.1 6006285..6006809(-) (ssb) [Variovorax sp. PBS-H4]
ATGGCATCGGTCAACAAAGTCATCCTCGTCGGCAATCTCGGACGCGACCCGGAAACCCGCACCTTCCCGAGCGGTGACCA
GATCTGCAACGTGACCCTGGCCACCACCGACAAGTGGAAGGACAAGCAGAGCGGCGAAATGCGCGAGGCCACCGAGTGGC
ACCGCCTTGTATTCAACGGCCGCCTGGCCGAGATCGCCGCGCAGTACCTGCGCAAGGGCTCGCAGATCTACGTCGAGGGC
CAGATCCGCACGCGCAAGTACACCGACAAGGATGGCGTCGAGAAATTTGCTACCGACATTCGCGTCGACCAGATGCAGAT
GCTCGGCAGCCGCCAGGGGCAGGGTGCTCCCTCGGGTGACGACGACGGCGGCTATGGCGGTGGTTCTTCGCAGGGCGGGG
GCGGCGGCTACTCGCGCCCGCCGGCCGCTGCACCGCGCGCGCCGGCCGCTTCGCCGGCTGCACGCCAGGCACCTGCCAAG
TCCTCGTCCGGCTTCGACGACATGGACGACGACATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P2FQB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.073

100

0.506
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.483
  ssb Neisseria meningitidis MC58

45.604

100

0.477
  ssb Vibrio cholerae strain A1552

45

100

0.466

Multiple sequence alignment