Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WDLP6_RS25840 Genome accession   NZ_LR594671
Coordinates   5307726..5308247 (-) Length   173 a.a.
NCBI ID   WP_162594658.1    Uniprot ID   -
Organism   Variovorax sp. PBL-E5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5302726..5313247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDLP6_RS25815 (E5CHR_05153) - 5303095..5304270 (-) 1176 WP_162594653.1 UxaA family hydrolase -
  WDLP6_RS25820 (E5CHR_05154) - 5304316..5304597 (-) 282 WP_162594654.1 flagellar biosynthesis protein FlgA -
  WDLP6_RS25825 (E5CHR_05155) - 5304720..5305490 (+) 771 WP_162594655.1 GntR family transcriptional regulator -
  WDLP6_RS25830 (E5CHR_05156) - 5305653..5306399 (+) 747 WP_197910202.1 NAD(P)-binding domain-containing protein -
  WDLP6_RS25835 (E5CHR_05157) - 5306396..5307718 (+) 1323 WP_162594657.1 MFS transporter -
  WDLP6_RS25840 (E5CHR_05158) ssb 5307726..5308247 (-) 522 WP_162594658.1 single-stranded DNA-binding protein Machinery gene
  WDLP6_RS25845 (E5CHR_05159) - 5308334..5309752 (+) 1419 WP_162594659.1 chloride channel protein -
  WDLP6_RS25850 (E5CHR_05160) - 5309706..5310308 (+) 603 WP_162594660.1 hypothetical protein -
  WDLP6_RS25855 (E5CHR_05161) - 5310296..5311150 (-) 855 WP_232077325.1 DNA methyltransferase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18444.33 Da        Isoelectric Point: 5.9427

>NTDB_id=1128237 WDLP6_RS25840 WP_162594658.1 5307726..5308247(-) (ssb) [Variovorax sp. PBL-E5]
MASVNKVILVGNLGRDPETRTFPSGDQVCNATLATTDKWKDKQSGEMREATEWHRLVFNGRLAEIAAQYLRKGSQVYIEG
QIRTRKYTDKDGVEKYATDIRVDQMQMLGSRQGQGGPSGGDDDGGYSQGGGGGGGGGYSRPPAAAPRAPAAAPRQAPAKS
SSGFDDMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1128237 WDLP6_RS25840 WP_162594658.1 5307726..5308247(-) (ssb) [Variovorax sp. PBL-E5]
ATGGCATCGGTCAACAAAGTCATCCTCGTCGGCAATCTCGGGCGCGACCCGGAAACACGCACCTTCCCCAGCGGCGACCA
GGTCTGCAACGCGACCCTTGCCACCACCGACAAGTGGAAGGACAAGCAGAGCGGCGAAATGCGCGAGGCCACCGAGTGGC
ACCGCCTGGTGTTCAACGGCCGGCTGGCCGAGATCGCCGCGCAGTACCTGCGCAAGGGCTCGCAGGTCTACATCGAAGGC
CAGATCCGTACGCGCAAGTACACCGACAAGGACGGCGTCGAGAAGTACGCGACCGACATCCGTGTCGACCAGATGCAGAT
GCTGGGCAGCCGGCAAGGGCAGGGCGGGCCGTCGGGCGGGGACGACGACGGTGGCTATTCGCAAGGCGGTGGTGGTGGGG
GTGGCGGCGGCTATTCGCGCCCGCCCGCGGCAGCGCCCCGTGCGCCTGCAGCGGCGCCGCGCCAGGCGCCTGCGAAGTCG
TCGTCGGGGTTCGACGACATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.644

100

0.526
  ssb Vibrio cholerae strain A1552

47.778

100

0.497
  ssb Neisseria gonorrhoeae MS11

45.977

100

0.462
  ssb Neisseria meningitidis MC58

45.402

100

0.457

Multiple sequence alignment