Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E5P2_RS26075 Genome accession   NZ_LR594666
Coordinates   5403216..5403740 (-) Length   174 a.a.
NCBI ID   WP_162569985.1    Uniprot ID   A0A8B6LT08
Organism   Variovorax sp. SRS16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5398216..5408740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5P2_RS26050 (G3W92_RS26030) - 5398588..5399763 (-) 1176 WP_162569980.1 UxaA family hydrolase -
  E5P2_RS26055 (G3W92_RS26035) - 5399809..5400090 (-) 282 WP_162569981.1 flagellar biosynthesis protein FlgA -
  E5P2_RS26060 (G3W92_RS26040) - 5400213..5400983 (+) 771 WP_162569982.1 GntR family transcriptional regulator -
  E5P2_RS26065 (G3W92_RS26045) - 5401146..5401892 (+) 747 WP_197908554.1 NAD(P)-binding domain-containing protein -
  E5P2_RS26070 (G3W92_RS26050) - 5401889..5403208 (+) 1320 WP_162569984.1 MFS transporter -
  E5P2_RS26075 (G3W92_RS26055) ssb 5403216..5403740 (-) 525 WP_162569985.1 single-stranded DNA-binding protein Machinery gene
  E5P2_RS26080 (G3W92_RS26060) - 5403827..5405245 (+) 1419 WP_162569986.1 chloride channel protein -
  E5P2_RS26085 (G3W92_RS26065) - 5405199..5405801 (+) 603 WP_162569987.1 hypothetical protein -
  E5P2_RS26090 (G3W92_RS26070) - 5405789..5406841 (-) 1053 WP_232080854.1 DNA methyltransferase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18519.39 Da        Isoelectric Point: 5.9427

>NTDB_id=1128216 E5P2_RS26075 WP_162569985.1 5403216..5403740(-) (ssb) [Variovorax sp. SRS16]
MASVNKVILVGNLGRDPETRTFPSGDQVCNATLATTDKWKDKQSGEMREATEWHRLVFNGRLAEIAAQYLRKGSQVYIEG
QIRTRKYTDKDGVEKYATDIRVDQMQMLGSRQGQGGPSGGDDDGGYSQGGGGGGGSGYSRPPAAAARAPAAAAPRQAPAK
SSSGFDDMDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1128216 E5P2_RS26075 WP_162569985.1 5403216..5403740(-) (ssb) [Variovorax sp. SRS16]
ATGGCATCGGTCAACAAAGTCATCCTCGTCGGCAATCTCGGGCGCGACCCGGAAACACGCACCTTCCCCAGCGGCGACCA
GGTCTGCAACGCGACCCTTGCCACCACCGACAAGTGGAAGGACAAGCAGAGCGGCGAAATGCGCGAGGCCACCGAGTGGC
ACCGCCTGGTATTCAACGGCCGGCTGGCCGAGATCGCCGCGCAGTACCTGCGCAAGGGCTCGCAGGTCTACATCGAAGGC
CAGATCCGCACGCGCAAGTACACCGACAAGGACGGCGTCGAGAAGTACGCGACCGACATCCGCGTCGACCAGATGCAGAT
GCTGGGCAGCCGGCAAGGGCAGGGCGGGCCGTCGGGCGGCGACGACGACGGCGGGTATTCGCAAGGTGGCGGCGGTGGTG
GTGGTAGCGGCTATTCGCGCCCGCCCGCGGCAGCGGCCCGTGCGCCCGCAGCGGCGGCGCCGCGCCAGGCGCCTGCGAAA
TCGTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B6LT08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.352

100

0.506
  ssb Glaesserella parasuis strain SC1401

46.961

100

0.489
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.483
  ssb Neisseria meningitidis MC58

45.055

100

0.471

Multiple sequence alignment