Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E5P3_RS28675 Genome accession   NZ_LR594662
Coordinates   6021470..6022003 (-) Length   177 a.a.
NCBI ID   WP_162589055.1    Uniprot ID   A0A6P2FFI0
Organism   Variovorax sp. RA8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6016470..6027003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5P3_RS28650 (G3W91_RS28655) - 6016789..6018045 (-) 1257 WP_162589050.1 glycosyltransferase family 4 protein -
  E5P3_RS28655 (G3W91_RS28660) - 6018042..6019145 (-) 1104 WP_162589051.1 glycosyltransferase -
  E5P3_RS28660 (G3W91_RS28665) - 6019142..6019624 (-) 483 WP_162589052.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  E5P3_RS28665 (G3W91_RS28670) - 6019621..6020100 (-) 480 WP_162589053.1 low molecular weight protein-tyrosine-phosphatase -
  E5P3_RS28670 (G3W91_RS28675) - 6020097..6021212 (-) 1116 WP_232073358.1 polysaccharide biosynthesis/export family protein -
  E5P3_RS28675 (G3W91_RS28680) ssb 6021470..6022003 (-) 534 WP_162589055.1 single-stranded DNA-binding protein Machinery gene
  E5P3_RS28680 (G3W91_RS28685) - 6022125..6023501 (+) 1377 WP_162589056.1 chloride channel protein -
  E5P3_RS28685 (G3W91_RS28690) uvrA 6023564..6026611 (+) 3048 WP_162589922.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18948.91 Da        Isoelectric Point: 5.9477

>NTDB_id=1128195 E5P3_RS28675 WP_162589055.1 6021470..6022003(-) (ssb) [Variovorax sp. RA8]
MASVNKVILVGNLGRDPETRTFPSGDQICNVTLATTDKWKDKQSGEMREATEWHRLVFNGRLAEIAAQYLRKGSQIYVEG
QIRTRKYTDKDGVEKYATDIRVDQMQMLGSRQGQGAPSGEDDGGYGGGYSQGGGGGGSGYSRPPAAAPRAPAASPAPRQA
PAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1128195 E5P3_RS28675 WP_162589055.1 6021470..6022003(-) (ssb) [Variovorax sp. RA8]
ATGGCATCGGTCAACAAAGTCATCCTCGTCGGCAATCTCGGGCGCGACCCCGAAACCCGCACCTTCCCGAGCGGTGACCA
GATCTGCAACGTGACCCTGGCCACCACCGACAAGTGGAAGGACAAGCAGAGCGGCGAGATGCGCGAAGCCACCGAGTGGC
ACCGCCTGGTGTTCAACGGCCGGCTGGCCGAAATCGCCGCGCAGTACCTGCGCAAGGGCTCGCAGATCTACGTCGAGGGC
CAGATCCGCACGCGCAAGTACACCGACAAGGACGGCGTCGAGAAGTACGCCACCGACATCCGCGTCGATCAGATGCAAAT
GCTGGGCAGCCGCCAGGGGCAGGGCGCGCCCTCGGGGGAGGACGATGGCGGCTATGGCGGTGGTTATTCGCAGGGTGGCG
GTGGCGGTGGCAGTGGCTACTCGCGCCCGCCCGCCGCGGCACCGCGCGCACCGGCCGCATCGCCGGCACCGCGCCAGGCG
CCGGCCAAGTCCTCGTCCGGCTTCGACGACATGGACGACGACATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P2FFI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.503
  ssb Vibrio cholerae strain A1552

45.652

100

0.475
  ssb Neisseria meningitidis MC58

45.355

100

0.469
  ssb Neisseria gonorrhoeae MS11

45.355

100

0.469

Multiple sequence alignment