Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGL23_RS09280 Genome accession   NZ_LR594049
Coordinates   1940820..1941311 (-) Length   163 a.a.
NCBI ID   WP_012130902.1    Uniprot ID   A0AAP2K452
Organism   Streptococcus gordonii strain NCTC10231     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1935820..1946311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS09250 (NCTC10231_01849) - 1936461..1936928 (+) 468 WP_061603400.1 hypothetical protein -
  FGL23_RS09255 (NCTC10231_01850) - 1937231..1937440 (-) 210 WP_045504435.1 DUF1648 domain-containing protein -
  FGL23_RS09260 (NCTC10231_01851) - 1937440..1939050 (-) 1611 WP_061603401.1 hypothetical protein -
  FGL23_RS09265 (NCTC10231_01852) - 1938977..1939690 (-) 714 WP_061603402.1 ABC transporter ATP-binding protein -
  FGL23_RS09270 (NCTC10231_01853) - 1939826..1940488 (-) 663 WP_081041939.1 TetR/AcrR family transcriptional regulator -
  FGL23_RS09275 (NCTC10231_01854) rpsR 1940542..1940781 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  FGL23_RS09280 (NCTC10231_01855) ssb 1940820..1941311 (-) 492 WP_012130902.1 single-stranded DNA-binding protein Machinery gene
  FGL23_RS09285 (NCTC10231_01856) rpsF 1941328..1941618 (-) 291 WP_002896497.1 30S ribosomal protein S6 -
  FGL23_RS09290 (NCTC10231_01857) folE 1941831..1942394 (+) 564 WP_061603403.1 GTP cyclohydrolase I FolE -
  FGL23_RS09295 (NCTC10231_01858) - 1942442..1943263 (+) 822 WP_061603404.1 PrsW family glutamic-type intramembrane protease -
  FGL23_RS09300 (NCTC10231_01859) - 1943357..1944115 (-) 759 WP_061603405.1 epoxyqueuosine reductase QueH -
  FGL23_RS09305 (NCTC10231_01860) groL 1944253..1945875 (-) 1623 WP_061603406.1 chaperonin GroEL -
  FGL23_RS09310 (NCTC10231_01861) groES 1945898..1946179 (-) 282 WP_045504448.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18152.89 Da        Isoelectric Point: 5.2060

>NTDB_id=1127992 FGL23_RS09280 WP_012130902.1 1940820..1941311(-) (ssb) [Streptococcus gordonii strain NCTC10231]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNHNGEREADFINVVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRTSREGQSGGYTPNNFGGNAAPSFGGADSSHQVPNFSRDENPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1127992 FGL23_RS09280 WP_012130902.1 1940820..1941311(-) (ssb) [Streptococcus gordonii strain NCTC10231]
ATGATAAATAACGTTGTACTTGTAGGTCGCATGACCCGCGATGCTGAACTACGCTATACACCGCAAAACCAAGCGGTTGC
AACATTTACATTAGCTGTTAATCGTAATTTTAAAAACCATAATGGTGAAAGAGAAGCAGACTTTATCAATGTTGTCATCT
GGCGTCAGCAGGCAGAAAATCTTGCAAACTGGGCTAAAAAAGGTGCTCTAGTCGGAATTACAGGTCGTATTCAGACTCGT
AATTATGAAAATCAGCAAGGTCAACGTGTCTACGTCACTGAGGTCGTTGCAGATAACTTCCAACTATTGGAAAGTCGTAC
AAGCCGTGAAGGACAGTCTGGAGGTTATACTCCAAATAACTTTGGCGGTAATGCAGCACCAAGCTTCGGAGGCGCTGACT
CGTCTCACCAAGTACCGAATTTTTCTCGTGATGAGAATCCATTTGGTAACTCAAATCCAATGGATATCTCAGATGATGAT
CTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

66.871

0.362

Multiple sequence alignment