Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   FGL23_RS03240 Genome accession   NZ_LR594049
Coordinates   686972..687634 (-) Length   220 a.a.
NCBI ID   WP_061603745.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 681972..692634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS03210 (NCTC10231_00641) - 682102..682665 (+) 564 WP_061603739.1 aminodeoxychorismate/anthranilate synthase component II -
  FGL23_RS03215 (NCTC10231_00642) trpD 682676..683680 (+) 1005 WP_061603740.1 anthranilate phosphoribosyltransferase -
  FGL23_RS03220 (NCTC10231_00643) trpC 683677..684444 (+) 768 WP_061603741.1 indole-3-glycerol phosphate synthase TrpC -
  FGL23_RS03225 (NCTC10231_00644) - 684431..685018 (+) 588 WP_061603742.1 phosphoribosylanthranilate isomerase -
  FGL23_RS03230 (NCTC10231_00645) trpB 685008..686231 (+) 1224 WP_061603743.1 tryptophan synthase subunit beta -
  FGL23_RS03235 (NCTC10231_00646) trpA 686224..687003 (+) 780 WP_061603744.1 tryptophan synthase subunit alpha -
  FGL23_RS03240 (NCTC10231_00647) cclA/cilC 686972..687634 (-) 663 WP_061603745.1 prepilin peptidase Machinery gene
  FGL23_RS03250 (NCTC10231_00648) - 687803..688318 (+) 516 WP_008809115.1 Dps family protein -
  FGL23_RS03255 (NCTC10231_00649) - 688497..688721 (+) 225 WP_041789586.1 YqgQ family protein -
  FGL23_RS03260 (NCTC10231_00650) - 688709..689095 (+) 387 WP_008809113.1 rhodanese-like domain-containing protein -
  FGL23_RS03265 (NCTC10231_00651) - 689270..689995 (-) 726 WP_061603746.1 16S rRNA pseudouridine(516) synthase -
  FGL23_RS03270 (NCTC10231_00652) typA 690177..692024 (+) 1848 WP_048774808.1 translational GTPase TypA -
  FGL23_RS03275 (NCTC10231_00653) - 692048..692326 (+) 279 WP_045501871.1 DUF3165 family protein -

Sequence


Protein


Download         Length: 220 a.a.        Molecular weight: 24685.08 Da        Isoelectric Point: 8.7471

>NTDB_id=1127958 FGL23_RS03240 WP_061603745.1 686972..687634(-) (cclA/cilC) [Streptococcus gordonii strain NCTC10231]
MIHLYFFLVGTVFASFLGLVIDRFPEQSIITPASHCNACGKRLAPRDLIPIVSQVLNRLRCRFCGDKIPLRYLFFECIFG
GLFLATSLGTISISQLLLLTMGITLAIYDQRELQYPLMIWLVFQLLLLMISGINLLILFFLALGLLAFFYNLRIGAGDFL
FLASCSAIFSLTEILILIQIASFSGLACFCFKKKKDRLAFVPCLLFGVVVIISYKLLLLG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1127958 FGL23_RS03240 WP_061603745.1 686972..687634(-) (cclA/cilC) [Streptococcus gordonii strain NCTC10231]
ATGATTCACCTATACTTTTTTCTTGTTGGTACCGTCTTTGCCTCATTCCTAGGCTTGGTCATCGACCGCTTCCCAGAGCA
GTCTATCATCACACCAGCTAGTCATTGTAATGCCTGTGGGAAAAGACTGGCCCCTCGTGACTTGATTCCTATTGTTTCCC
AAGTCTTGAACCGTCTTCGCTGTCGCTTCTGTGGAGACAAGATTCCCTTACGTTATTTATTTTTTGAATGTATCTTTGGC
GGTCTTTTTCTGGCCACTTCACTTGGTACAATTTCTATCAGTCAACTCCTGCTACTTACCATGGGCATAACATTGGCCAT
ATATGATCAAAGAGAGCTGCAATACCCCTTAATGATCTGGTTAGTTTTTCAGCTCTTGTTGCTAATGATATCGGGCATCA
ATCTTCTCATACTCTTCTTTTTAGCCCTAGGACTTCTAGCCTTCTTTTATAATCTTCGTATTGGAGCTGGTGACTTTCTT
TTTCTTGCTTCCTGCTCAGCCATTTTTAGTCTAACGGAAATTCTCATTCTTATCCAAATCGCTAGCTTCTCTGGCCTCGC
CTGTTTCTGCTTTAAAAAGAAAAAAGACAGGCTAGCATTTGTACCCTGTCTTTTGTTTGGTGTGGTGGTGATTATTTCTT
ATAAGCTGCTGCTTCTTGGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis NCTC 12261

59.361

99.545

0.591

  cclA/cilC Streptococcus mitis SK321

58.904

99.545

0.586

  cclA/cilC Streptococcus pneumoniae Rx1

57.991

99.545

0.577

  cclA/cilC Streptococcus pneumoniae D39

57.991

99.545

0.577

  cclA/cilC Streptococcus pneumoniae R6

57.991

99.545

0.577

  cclA/cilC Streptococcus pneumoniae TIGR4

57.534

99.545

0.573


Multiple sequence alignment