Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   FGL16_RS08280 Genome accession   NZ_LR594043
Coordinates   1555344..1555988 (+) Length   214 a.a.
NCBI ID   WP_014736223.1    Uniprot ID   -
Organism   Streptococcus suis strain NCTC10237     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1550344..1560988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL16_RS08255 (NCTC10237_01621) - 1551005..1552342 (-) 1338 WP_014736218.1 hemolysin family protein -
  FGL16_RS08260 (NCTC10237_01622) - 1552475..1553254 (+) 780 WP_014736219.1 ABC transporter ATP-binding protein -
  FGL16_RS08265 (NCTC10237_01623) - 1553270..1553824 (-) 555 WP_014736220.1 class I SAM-dependent methyltransferase -
  FGL16_RS08270 (NCTC10237_01624) - 1553834..1554352 (-) 519 WP_014736221.1 TetR/AcrR family transcriptional regulator -
  FGL16_RS08275 (NCTC10237_01625) - 1554474..1555292 (+) 819 WP_014736222.1 cation diffusion facilitator family transporter -
  FGL16_RS08280 (NCTC10237_01626) cclA/cilC 1555344..1555988 (+) 645 WP_014736223.1 A24 family peptidase Machinery gene
  FGL16_RS08285 (NCTC10237_01627) - 1556096..1557556 (+) 1461 WP_014736224.1 nicotinate phosphoribosyltransferase -
  FGL16_RS08290 (NCTC10237_01628) nadE 1557569..1558393 (+) 825 WP_014736225.1 ammonia-dependent NAD(+) synthetase -
  FGL16_RS08300 (NCTC10237_01630) - 1559428..1559955 (-) 528 WP_002942846.1 VanZ family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24215.33 Da        Isoelectric Point: 8.4760

>NTDB_id=1127642 FGL16_RS08280 WP_014736223.1 1555344..1555988(+) (cclA/cilC) [Streptococcus suis strain NCTC10237]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLKAWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCSFLLLAYLIEKWQVNIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFISSIPIILCT

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1127642 FGL16_RS08280 WP_014736223.1 1555344..1555988(+) (cclA/cilC) [Streptococcus suis strain NCTC10237]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCCTCTAGTCACTGCAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACTTAATTCCAGTCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAATTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGATATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTTGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTAGCTTTTTACTCTTGGCCTATCTGATTGAAAAATGGCAAGTCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCGCCATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTCATTTCAAGTATTCCTATCATTCTGTGCA
CCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

48.585

99.065

0.481
  cclA/cilC Streptococcus pneumoniae Rx1

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae D39

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae R6

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae TIGR4

46.698

99.065

0.463
  cclA/cilC Streptococcus mitis NCTC 12261

44.811

99.065

0.444

Multiple sequence alignment