Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGL12_RS09600 Genome accession   NZ_LR594041
Coordinates   1995628..1996119 (-) Length   163 a.a.
NCBI ID   WP_012130902.1    Uniprot ID   A0AAP2K452
Organism   Streptococcus gordonii strain NCTC9124     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1990628..2001119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL12_RS11055 (NCTC9124_01928) - 1990876..1991268 (+) 393 WP_241974401.1 hypothetical protein -
  FGL12_RS09570 (NCTC9124_01929) - 1991271..1991738 (+) 468 WP_012130896.1 hypothetical protein -
  FGL12_RS09575 (NCTC9124_01930) - 1992042..1992251 (-) 210 WP_012130897.1 DUF1648 domain-containing protein -
  FGL12_RS09580 (NCTC9124_01931) - 1992251..1993861 (-) 1611 WP_041789793.1 hypothetical protein -
  FGL12_RS09585 (NCTC9124_01932) - 1993788..1994501 (-) 714 WP_012130900.1 ABC transporter ATP-binding protein -
  FGL12_RS09590 (NCTC9124_01933) - 1994642..1995298 (-) 657 WP_080512843.1 TetR/AcrR family transcriptional regulator -
  FGL12_RS09595 (NCTC9124_01934) rpsR 1995350..1995589 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  FGL12_RS09600 (NCTC9124_01935) ssb 1995628..1996119 (-) 492 WP_012130902.1 single-stranded DNA-binding protein Machinery gene
  FGL12_RS09605 (NCTC9124_01936) rpsF 1996136..1996426 (-) 291 WP_002896497.1 30S ribosomal protein S6 -
  FGL12_RS09610 (NCTC9124_01937) folE 1996639..1997202 (+) 564 WP_012130903.1 GTP cyclohydrolase I FolE -
  FGL12_RS09615 (NCTC9124_01938) - 1997250..1998071 (+) 822 WP_012130904.1 PrsW family glutamic-type intramembrane protease -
  FGL12_RS09620 (NCTC9124_01939) - 1998165..1998923 (-) 759 WP_012130905.1 epoxyqueuosine reductase QueH -
  FGL12_RS09625 (NCTC9124_01940) groL 1999047..2000669 (-) 1623 WP_012130906.1 chaperonin GroEL -
  FGL12_RS09630 (NCTC9124_01941) groES 2000692..2000973 (-) 282 WP_012130907.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18152.89 Da        Isoelectric Point: 5.2060

>NTDB_id=1127518 FGL12_RS09600 WP_012130902.1 1995628..1996119(-) (ssb) [Streptococcus gordonii strain NCTC9124]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNHNGEREADFINVVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRTSREGQSGGYTPNNFGGNAAPSFGGADSSHQVPNFSRDENPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1127518 FGL12_RS09600 WP_012130902.1 1995628..1996119(-) (ssb) [Streptococcus gordonii strain NCTC9124]
ATGATAAATAACGTTGTACTTGTAGGTCGCATGACCCGCGATGCTGAACTACGCTATACACCGCAAAACCAAGCGGTTGC
AACATTTACATTAGCTGTTAATCGTAATTTCAAAAACCATAATGGTGAAAGAGAAGCAGACTTTATCAATGTTGTCATTT
GGCGTCAGCAGGCAGAAAATCTTGCAAACTGGGCTAAAAAAGGTGCTCTAGTCGGAATTACAGGTCGTATTCAGACCCGT
AATTATGAAAATCAGCAAGGTCAACGTGTCTACGTCACTGAGGTCGTTGCAGACAACTTCCAACTATTGGAAAGTCGTAC
AAGCCGTGAAGGACAGTCTGGAGGCTATACTCCAAATAACTTTGGCGGTAATGCAGCACCAAGCTTCGGAGGCGCTGACT
CGTCTCACCAAGTACCGAATTTTTCTCGTGATGAGAATCCATTTGGTAACTCAAATCCAATGGATATCTCAGATGATGAT
CTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

66.871

0.362

Multiple sequence alignment