Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACAty_RS08775 | Genome accession | NZ_CP005986 |
| Coordinates | 1803697..1804203 (+) | Length | 168 a.a. |
| NCBI ID | WP_004872799.1 | Uniprot ID | A0A060A059 |
| Organism | Acidithiobacillus caldus ATCC 51756 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1778082..1809769 | 1803697..1804203 | within | 0 |
Gene organization within MGE regions
Location: 1778082..1809769
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACAty_RS08655 (Acaty_c1753) | - | 1778082..1779143 (+) | 1062 | WP_014003116.1 | tellurite resistance/C4-dicarboxylate transporter family protein | - |
| ACAty_RS08660 (Acaty_c1754) | - | 1779238..1779888 (-) | 651 | WP_004872770.1 | glutathione S-transferase family protein | - |
| ACAty_RS16465 (Acaty_c1755) | - | 1779927..1780253 (-) | 327 | WP_319023768.1 | DUF1971 domain-containing protein | - |
| ACAty_RS16470 | fdxA | 1780263..1780547 (-) | 285 | Protein_1733 | ferredoxin FdxA | - |
| ACAty_RS08670 (Acaty_c1756) | - | 1780544..1781059 (-) | 516 | WP_038472009.1 | hypothetical protein | - |
| ACAty_RS08675 (Acaty_c1757) | - | 1781056..1781586 (-) | 531 | WP_004872774.1 | hemerythrin domain-containing protein | - |
| ACAty_RS08680 (Acaty_c1758) | - | 1781913..1785695 (+) | 3783 | WP_004872776.1 | nitrate reductase subunit alpha | - |
| ACAty_RS08685 (Acaty_c1759) | narH | 1785692..1787245 (+) | 1554 | WP_004872778.1 | nitrate reductase subunit beta | - |
| ACAty_RS08690 (Acaty_c1760) | narJ | 1787254..1787799 (+) | 546 | WP_004872780.1 | nitrate reductase molybdenum cofactor assembly chaperone | - |
| ACAty_RS08695 (Acaty_c1761) | narI | 1787796..1788494 (+) | 699 | WP_004872781.1 | respiratory nitrate reductase subunit gamma | - |
| ACAty_RS08700 | - | 1788504..1788923 (+) | 420 | WP_038472013.1 | DUF302 domain-containing protein | - |
| ACAty_RS08705 (Acaty_c1762) | - | 1788966..1790282 (+) | 1317 | WP_004872782.1 | nitrate/nitrite transporter | - |
| ACAty_RS08710 (Acaty_c1763) | - | 1790297..1790758 (-) | 462 | WP_198408158.1 | DUF488 domain-containing protein | - |
| ACAty_RS08715 (Acaty_c1764) | - | 1790868..1792088 (-) | 1221 | WP_226047659.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ACAty_RS08720 (Acaty_c1765) | - | 1792220..1793380 (-) | 1161 | WP_038472016.1 | efflux RND transporter periplasmic adaptor subunit | - |
| ACAty_RS08725 (Acaty_c1766) | - | 1793373..1794797 (-) | 1425 | WP_070114521.1 | efflux transporter outer membrane subunit | - |
| ACAty_RS08730 (Acaty_c1767) | - | 1794794..1796359 (-) | 1566 | WP_038472019.1 | MFS transporter | - |
| ACAty_RS08735 (Acaty_c1768) | - | 1796443..1797339 (+) | 897 | WP_038472022.1 | LysR family transcriptional regulator | - |
| ACAty_RS08740 | - | 1797528..1798600 (-) | 1073 | Protein_1748 | IS5 family transposase | - |
| ACAty_RS08745 (Acaty_c1770) | - | 1798655..1798843 (+) | 189 | WP_038472026.1 | hypothetical protein | - |
| ACAty_RS15410 | - | 1798927..1799643 (-) | 717 | WP_082179262.1 | type 1 glutamine amidotransferase | - |
| ACAty_RS15890 | - | 1800153..1800737 (+) | 585 | Protein_1751 | transposase | - |
| ACAty_RS08760 (Acaty_c1773) | - | 1801374..1802315 (+) | 942 | WP_004872796.1 | phospholipase D-like domain-containing protein | - |
| ACAty_RS08765 (Acaty_c1774) | - | 1802317..1803084 (+) | 768 | WP_004872797.1 | metallophosphoesterase | - |
| ACAty_RS15425 (Acaty_c1775) | - | 1803307..1803651 (+) | 345 | WP_082179264.1 | TraR/DksA C4-type zinc finger protein | - |
| ACAty_RS08775 (Acaty_c1776) | ssb | 1803697..1804203 (+) | 507 | WP_004872799.1 | single-stranded DNA-binding protein | Machinery gene |
| ACAty_RS16125 | - | 1804482..1804694 (-) | 213 | WP_051620766.1 | hypothetical protein | - |
| ACAty_RS15435 (Acaty_c1779) | - | 1804669..1805202 (+) | 534 | WP_238323829.1 | uracil-DNA glycosylase | - |
| ACAty_RS08795 (Acaty_c1780) | - | 1805269..1805628 (+) | 360 | WP_038472035.1 | hypothetical protein | - |
| ACAty_RS08800 (Acaty_c1781) | - | 1805777..1806193 (+) | 417 | WP_004872813.1 | hypothetical protein | - |
| ACAty_RS08805 (Acaty_c1782) | - | 1806491..1807057 (+) | 567 | WP_004872814.1 | metallophosphoesterase | - |
| ACAty_RS08810 (Acaty_c1783) | - | 1807407..1807817 (-) | 411 | WP_004872815.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| ACAty_RS08815 (Acaty_c1784) | - | 1807989..1808300 (+) | 312 | WP_004872816.1 | hypothetical protein | - |
| ACAty_RS15895 | - | 1808736..1808945 (+) | 210 | WP_141738322.1 | hypothetical protein | - |
| ACAty_RS15900 | - | 1808956..1809300 (+) | 345 | WP_141738323.1 | hypothetical protein | - |
| ACAty_RS08825 (Acaty_c1786) | - | 1809542..1809769 (+) | 228 | WP_004872818.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18643.87 Da Isoelectric Point: 9.7486
>NTDB_id=112749 ACAty_RS08775 WP_004872799.1 1803697..1804203(+) (ssb) [Acidithiobacillus caldus ATCC 51756]
MSGLNKVILLGYLGADPEMRYMPDGTAVANLSIATSESYKDKEGNRQERTEWHRVSLYRRQAEVAGEYLKKGSMAYVEGR
LRTRKWTDKEGQERYTTEIVGDRLQLIGGRRDGDGQESVNGGSKTGRTAPKGSGGGANMDVPPDDFDDKIPFAVAADIAR
RGLRRVRF
MSGLNKVILLGYLGADPEMRYMPDGTAVANLSIATSESYKDKEGNRQERTEWHRVSLYRRQAEVAGEYLKKGSMAYVEGR
LRTRKWTDKEGQERYTTEIVGDRLQLIGGRRDGDGQESVNGGSKTGRTAPKGSGGGANMDVPPDDFDDKIPFAVAADIAR
RGLRRVRF
Nucleotide
Download Length: 507 bp
>NTDB_id=112749 ACAty_RS08775 WP_004872799.1 1803697..1804203(+) (ssb) [Acidithiobacillus caldus ATCC 51756]
ATGAGTGGTTTGAACAAGGTGATTTTGTTGGGGTACCTGGGCGCTGACCCGGAAATGCGGTACATGCCCGATGGTACGGC
AGTGGCCAATCTTTCCATTGCCACATCGGAGTCCTACAAGGACAAGGAGGGGAATCGGCAGGAGCGCACGGAATGGCATC
GTGTATCTCTGTACCGTCGTCAGGCTGAGGTTGCCGGAGAGTATCTCAAGAAGGGCAGCATGGCCTACGTCGAGGGCCGT
CTCCGTACCCGGAAATGGACCGACAAAGAGGGCCAGGAGCGCTATACTACCGAGATTGTCGGCGATCGTTTGCAGTTGAT
AGGCGGACGCCGGGATGGTGATGGTCAGGAATCTGTGAACGGCGGTTCCAAGACTGGTCGTACGGCTCCCAAGGGTTCTG
GTGGTGGTGCCAACATGGATGTACCGCCGGACGATTTTGACGACAAAATTCCGTTCGCGGTCGCCGCGGATATCGCGCGT
CGGGGATTGCGGCGGGTTCGTTTCTGA
ATGAGTGGTTTGAACAAGGTGATTTTGTTGGGGTACCTGGGCGCTGACCCGGAAATGCGGTACATGCCCGATGGTACGGC
AGTGGCCAATCTTTCCATTGCCACATCGGAGTCCTACAAGGACAAGGAGGGGAATCGGCAGGAGCGCACGGAATGGCATC
GTGTATCTCTGTACCGTCGTCAGGCTGAGGTTGCCGGAGAGTATCTCAAGAAGGGCAGCATGGCCTACGTCGAGGGCCGT
CTCCGTACCCGGAAATGGACCGACAAAGAGGGCCAGGAGCGCTATACTACCGAGATTGTCGGCGATCGTTTGCAGTTGAT
AGGCGGACGCCGGGATGGTGATGGTCAGGAATCTGTGAACGGCGGTTCCAAGACTGGTCGTACGGCTCCCAAGGGTTCTG
GTGGTGGTGCCAACATGGATGTACCGCCGGACGATTTTGACGACAAAATTCCGTTCGCGGTCGCCGCGGATATCGCGCGT
CGGGGATTGCGGCGGGTTCGTTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
48.333 |
100 |
0.518 |
| ssb | Vibrio cholerae strain A1552 |
47.126 |
100 |
0.488 |
| ssb | Neisseria gonorrhoeae MS11 |
42.442 |
100 |
0.435 |
| ssb | Neisseria meningitidis MC58 |
41.86 |
100 |
0.429 |