Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACAty_RS03240 Genome accession   NZ_CP005986
Coordinates   639741..640196 (+) Length   151 a.a.
NCBI ID   WP_004870790.1    Uniprot ID   -
Organism   Acidithiobacillus caldus ATCC 51756     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 634741..645196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAty_RS03225 (Acaty_c0646) - 635261..636280 (+) 1020 WP_004870784.1 DNA-directed RNA polymerase subunit alpha -
  ACAty_RS03230 (Acaty_c0647) rplQ 636322..636708 (+) 387 WP_004870787.1 50S ribosomal protein L17 -
  ACAty_RS03235 (Acaty_c0648) uvrA 636842..639658 (-) 2817 WP_004870788.1 excinuclease ABC subunit UvrA -
  ACAty_RS03240 (Acaty_c0649) ssb 639741..640196 (+) 456 WP_004870790.1 single-stranded DNA-binding protein Machinery gene
  ACAty_RS03245 (Acaty_c0650) - 640327..641604 (+) 1278 WP_038471602.1 site-specific integrase -
  ACAty_RS03250 (Acaty_c0651) - 641891..642946 (+) 1056 WP_004870689.1 IS5-like element ISAtc5 family transposase -
  ACAty_RS15765 - 642946..643095 (+) 150 WP_153801797.1 hypothetical protein -
  ACAty_RS03255 (Acaty_c0652) - 643101..644402 (+) 1302 WP_004870795.1 site-specific integrase -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16697.45 Da        Isoelectric Point: 5.3376

>NTDB_id=112742 ACAty_RS03240 WP_004870790.1 639741..640196(+) (ssb) [Acidithiobacillus caldus ATCC 51756]
MAGVNRVILLGHLGRDPEMRYQPSGGAIATLNLATSETYKDREGNRQERTEWHRVVFFGRPAEIAGEYLRKGSMAYVEGR
LQTRKWTDKEGQERYTTEVVGDRLQLVGGRGGGGANLDEDGPRSSAGAGSGRSNREMPPVPQEDFDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=112742 ACAty_RS03240 WP_004870790.1 639741..640196(+) (ssb) [Acidithiobacillus caldus ATCC 51756]
ATGGCGGGAGTGAATCGGGTCATCTTGTTGGGGCACCTGGGCCGTGATCCGGAGATGCGCTATCAGCCCAGTGGTGGCGC
CATTGCCACCCTGAATTTGGCGACATCCGAGACCTATAAGGATCGCGAGGGCAATCGACAAGAGCGCACCGAGTGGCATC
GCGTGGTGTTCTTTGGTCGGCCGGCGGAGATTGCCGGCGAGTATCTGCGCAAAGGAAGCATGGCCTATGTCGAGGGGCGC
TTGCAGACCCGCAAGTGGACGGACAAGGAGGGCCAGGAGCGCTACACCACCGAGGTGGTGGGCGACCGCCTGCAATTGGT
CGGCGGGCGTGGCGGCGGCGGGGCCAACCTGGACGAGGATGGCCCCCGTAGCAGCGCCGGTGCCGGTTCTGGCCGTAGCA
ATCGCGAGATGCCGCCTGTTCCGCAGGAAGACTTTGACGACGACATTCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.667

100

0.556
  ssb Vibrio cholerae strain A1552

47.977

100

0.55
  ssb Neisseria gonorrhoeae MS11

42.442

100

0.483
  ssb Neisseria meningitidis MC58

41.86

100

0.477

Multiple sequence alignment