Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   LG36_RS08350 Genome accession   NZ_CP009472
Coordinates   1751719..1752717 (-) Length   332 a.a.
NCBI ID   WP_038601596.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1746719..1757717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS08330 (LG36_1597) trxA 1747110..1747424 (-) 315 WP_003129442.1 thioredoxin -
  LG36_RS08335 (LG36_1598) mutS/mutS2 1747521..1749851 (-) 2331 WP_038601592.1 endonuclease MutS2 Machinery gene
  LG36_RS08340 (LG36_1599) - 1749896..1750456 (-) 561 WP_003129445.1 CvpA family protein -
  LG36_RS08345 (LG36_1600) - 1750616..1751581 (-) 966 WP_038601594.1 NAD(P)/FAD-dependent oxidoreductase -
  LG36_RS08350 (LG36_1601) ccpA 1751719..1752717 (-) 999 WP_038601596.1 catabolite control protein A Regulator
  LG36_RS08355 (LG36_1602) - 1752932..1754020 (+) 1089 WP_038601599.1 Xaa-Pro peptidase family protein -
  LG36_RS08360 (LG36_1603) - 1754134..1756137 (-) 2004 WP_038601601.1 cell division site-positioning protein MapZ family protein -
  LG36_RS08365 (LG36_1604) - 1756285..1757439 (-) 1155 WP_003129451.1 class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36602.71 Da        Isoelectric Point: 4.9196

>NTDB_id=112739 LG36_RS08350 WP_038601596.1 1751719..1752717(-) (ccpA) [Lactococcus lactis strain AI06]
MVESTTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAA
ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSV
NIDYHLAAYQSTKKIIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGA
TSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLTKLMLKEDVEQNQLV
LDHEIFSRRSTK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=112739 LG36_RS08350 WP_038601596.1 1751719..1752717(-) (ccpA) [Lactococcus lactis strain AI06]
ATGGTAGAATCAACAACAACAATTTATGATGTGGCACGTGTCGCCGGAGTGTCAATGGCAACTGTTAGTCGTGTTGTAAA
TGGAAATGCAAATGTAAAGGAAAAGACGCGCCAGAAGGTCTTAGAAGCTATTGCTGAGCTTGACTATCGTCCTAATGCAG
TTGCGCGCGGACTCGCAAGTAAACGTACAACAACAGTTGGTGTTATCTTGCCAACCATCACTTCAACTTACTTCGCAGCG
ATTACTCGTGGGGTTGATGATATCGCTTCCATGTATAAATACAACATGATTTTAGCTAATAGTGATAATGATGTTGAAAA
AGAAGAAAAAGTTTTAGAAACTTTCTTATCAAAACAAGTTGACGGAATCGTCTATATGGGTTCATCTTTAGATGAAAAAA
TTAGAACTTCCCTCAAAAATTCAAGAACACCTGTCGTTTTAGTTGGAACAATCGATGGAGATAAAGAAATTCCATCTGTT
AATATTGATTACCATTTGGCTGCTTATCAATCAACTAAAAAAATTATTGATAGTGGAAATAAAAAAATCGCTTATATCAT
GGGTTCATTAAAAGACGTTGAAAATACAGAACGTATGGTTGGTTATCAAGAAGCTTTGCTTGAAGCAAATATTGAATTTG
ATGAAAACCTCGTTTTTGAAGGTAATTATAGCTATGAACAAGGAAAAGCACTTGCTGAACGTTTACTTGAGCGAGGAGCA
ACTTCTGCAGTAGTATCACATGATACAGTAGCCGTTGGACTCTTATCTGCAATGATGGATAAAGGAGTGAAAGTTCCTGA
AGATTTCGAAATTATCTCAGGTGCAAATTCACCAATTACTCAATATACATATCCAACTTTAACTTCTGTTAACCAACCCC
TTTACGATTTGGGGGCAGTAGCAATGCGCCTTTTGACAAAATTAATGCTTAAAGAAGATGTTGAACAAAATCAATTAGTT
TTGGATCATGAAATCTTTTCTCGCCGTTCTACTAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-52)

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

99.699

100

0.997
  ccpA Streptococcus pneumoniae D39

57.1

99.699

0.569
  ccpA Streptococcus gordonii str. Challis substr. CH1

56.798

99.699

0.566

Multiple sequence alignment